RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 DCTPP1Q9H773 170 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 CHL1O00533 1208 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 RIOK3O14730 519 aaKnown RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 TAF5LO75529 589 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 ABCD1P33897 745 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 MCM7P33993 719 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 TFAP4Q01664 338 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 SPECC1Q5M775 1068 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 NCAPH2Q6IBW4 605 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 MIER3Q7Z3K6 550 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 NPC1L1Q9UHC9 1359 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 USP17L3A6NCW0 530 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 USP17L4A6NCW7 530 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 TAF3Q5VWG9 929 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 CEP85Q6P2H3 762 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 CNNM4Q6P4Q7 775 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 TMED8Q6PL24 325 aaPredicted RBP4.76□□□□□ -1.65
VCAN-209ENST00000513016 USP17L1Q7RTZ2 530 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 APOBEC3FQ8IUX4 373 aaKnown RBP4.76□□□□□ -1.65
VCAN-209ENST00000513016 TPCN1Q9ULQ1 816 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 FLOT1O75955 427 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 ARID4AP29374 1257 aaPredicted RBP4.76□□□□□ -1.65
VCAN-209ENST00000513016 UBE2HP62256 183 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 ICA1Q05084 483 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 CREB3L3Q68CJ9 461 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 JAKMIP2Q96AA8 810 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 DHX58Q96C10 678 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 COA1Q9GZY4 146 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.76□□□□□ -1.65
VCAN-209ENST00000513016 GSDMBQ8TAX9 411 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 KIF21AQ7Z4S6 1674 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 CETN3O15182 167 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 SPTLC2O15270 562 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 GPAA1O43292 621 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 COPB2P35606 906 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 KRT83P78385 493 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 CLEC4GQ6UXB4 293 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 METTL23Q86XA0 190 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 KBTBD3Q8NAB2 608 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 IQCGQ9H095 443 aaKnown RBP4.76□□□□□ -1.65
VCAN-209ENST00000513016 NT5C3AQ9H0P0 336 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 PODXL2Q9NZ53 605 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 RNF181Q9P0P0 153 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 KDM3AQ9Y4C1 1321 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 ARHGEF12Q9NZN5 1544 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 CHMP2AO43633 222 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 ZSCAN22P10073 491 aaPredicted RBP4.76□□□□□ -1.65
VCAN-209ENST00000513016 BTDP43251 543 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 BCAMP50895 628 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 GJD4Q96KN9 370 aaPredicted RBP4.76□□□□□ -1.65
VCAN-209ENST00000513016 MLH3Q9UHC1 1453 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 KDM5DQ9BY66 1539 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 MMP10P09238 476 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 ZSCAN20P17040 1043 aaPredicted RBP4.76□□□□□ -1.65
VCAN-209ENST00000513016 POLR2BP30876 1174 aaKnown RBP4.76□□□□□ -1.65
VCAN-209ENST00000513016 MCM4P33991 863 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 HLTFQ14527 1009 aaKnown RBP eCLIP4.76□□□□□ -1.65
VCAN-209ENST00000513016 PTPN14Q15678 1187 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 GALNT17Q6IS24 598 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 ANKARQ7Z5J8 1434 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 FAM160B2Q86V87 743 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 HAUS7Q99871 368 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 GAS7O60861 476 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 TACC1O75410 805 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 TNNC2P02585 160 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 GNAT1P11488 350 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 SLFN13Q68D06 897 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 ZNF830Q96NB3 372 aaPredicted RBP4.76□□□□□ -1.65
VCAN-209ENST00000513016 GCNAQ96QF7 691 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 TEKT3Q9BXF9 490 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 MTUS1Q9ULD2 1270 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 ODF2LQ9ULJ1 636 aa4.76□□□□□ -1.65
VCAN-209ENST00000513016 ANGEL1Q9UNK9 670 aaKnown RBP4.76□□□□□ -1.65
VCAN-209ENST00000513016 B4E1Z4 1266 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 KRT5P13647 590 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 PLCB3Q01970 1234 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 SLC17A8Q8NDX2 589 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 CCDC114Q96M63 670 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 DBNDD2Q9BQY9 259 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 ZBED2Q9BTP6 218 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 DISP1Q96F81 1524 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 SPATA31A3Q5VYP0 1347 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 PPP2R5AQ15172 486 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 USH1GQ495M9 461 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 SLFN12Q8IYM2 578 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 PPP2R3CQ969Q6 453 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 LLPHQ9BRT6 129 aaKnown RBP4.75□□□□□ -1.65
VCAN-209ENST00000513016 ZNF341Q9BYN7 854 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 FAM204AQ9H8W3 233 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 CCPG1Q9ULG6 757 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 KCNH4Q9UQ05 1017 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 KDM6BO15054 1643 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 ABCA5Q8WWZ7 1642 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 TESPA1A2RU30 521 aaPredicted RBP4.75□□□□□ -1.65
VCAN-209ENST00000513016 SH3BP5O60239 455 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 UVSSAQ2YD98 709 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 GSTA5Q7RTV2 222 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 FOXP4Q8IVH2 680 aaPredicted RBP4.75□□□□□ -1.65
VCAN-209ENST00000513016 RNF169Q8NCN4 708 aa4.75□□□□□ -1.65
VCAN-209ENST00000513016 KIF18AQ8NI77 898 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms