RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 OTUD7BQ6GQQ9 843 aa14.16□□□□□ -0.14
PTPRF-212ENST00000477970 MAP3K14Q99558 947 aa14.16□□□□□ -0.14
PTPRF-212ENST00000477970 DNAJC25Q9H1X3 360 aa14.16□□□□□ -0.14
PTPRF-212ENST00000477970 ERICH2A1L162 156 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 KCNQ4P56696 695 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 TRIM29Q14134 588 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 PTPAQ15257 358 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 SEC23AQ15436 765 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 ADGRA1Q86SQ6 560 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 NBPF11Q86T75 865 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 MICU3Q86XE3 530 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 NLRP3Q96P20 1036 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 COL23A1Q86Y22 540 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-212ENST00000477970 SETDB2Q96T68 719 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 HPSEQ9Y251 543 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 GYG1P46976 350 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 RPS8P62241 208 aaKnown RBP14.15□□□□□ -0.14
PTPRF-212ENST00000477970 SF3A1Q15459 793 aaKnown RBP14.15□□□□□ -0.14
PTPRF-212ENST00000477970 ESR2Q92731 530 aa14.15□□□□□ -0.14
PTPRF-212ENST00000477970 CELF1Q92879 486 aaKnown RBP14.15□□□□□ -0.14
PTPRF-212ENST00000477970 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.15□□□□□ -0.14
PTPRF-212ENST00000477970 NAT10Q9H0A0 1025 aaKnown RBP14.15□□□□□ -0.14
PTPRF-212ENST00000477970 POLR3DP05423 398 aaPredicted RBP14.14□□□□□ -0.15
PTPRF-212ENST00000477970 RTN1Q16799 776 aa14.14□□□□□ -0.15
PTPRF-212ENST00000477970 MRFAP1L1Q96HT8 127 aa14.14□□□□□ -0.15
PTPRF-212ENST00000477970 FOXP1Q9H334 677 aaPredicted RBP14.14□□□□□ -0.15
PTPRF-212ENST00000477970 MYH6P13533 1939 aa14.14□□□□□ -0.15
PTPRF-212ENST00000477970 DEXIO95424 95 aa14.14□□□□□ -0.15
PTPRF-212ENST00000477970 NDUFA8P51970 172 aa14.14□□□□□ -0.15
PTPRF-212ENST00000477970 TPTE2Q6XPS3 522 aa14.14□□□□□ -0.15
PTPRF-212ENST00000477970 MMP1P03956 469 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 TRIM22Q8IYM9 498 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 RAI14Q9P0K7 980 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 KIAA1468Q9P260 1216 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 ZPR1O75312 459 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 CEP57L1Q8IYX8 460 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 KIAA1524Q8TCG1 905 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 PDGFDQ9GZP0 370 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-212ENST00000477970 CUTAO60888 179 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 TM4SF1P30408 202 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 C11orf57Q6ZUT1 292 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-212ENST00000477970 RAB11FIP4Q86YS3 637 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 DHX40Q8IX18 779 aaKnown RBP14.13□□□□□ -0.15
PTPRF-212ENST00000477970 CRACR2BQ8N4Y2 399 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-212ENST00000477970 MIGA1Q8NAN2 632 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 PHKBQ93100 1093 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 NSUN4Q96CB9 384 aaKnown RBP14.13□□□□□ -0.15
PTPRF-212ENST00000477970 NOL10Q9BSC4 688 aaKnown RBP14.13□□□□□ -0.15
PTPRF-212ENST00000477970 RNF26Q9BY78 433 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-212ENST00000477970 KCNF1Q9H3M0 494 aa14.13□□□□□ -0.15
PTPRF-212ENST00000477970 RTCBQ9Y3I0 505 aaKnown RBP14.13□□□□□ -0.15
PTPRF-212ENST00000477970 BAZ2AQ9UIF9 1905 aaKnown RBP14.12□□□□□ -0.15
PTPRF-212ENST00000477970 ORC4O43929 436 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 NOLC1Q14978 699 aaKnown RBP eCLIP14.12□□□□□ -0.154e-9■□□□□ 10.2
PTPRF-212ENST00000477970 C15orf52Q6ZUT6 534 aaKnown RBP14.12□□□□□ -0.15
PTPRF-212ENST00000477970 NBPF5PQ86XG9 351 aaPredicted RBP14.12□□□□□ -0.15
PTPRF-212ENST00000477970 ZNF654Q8IZM8 581 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 ZNF384Q8TF68 577 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 INCENPQ9NQS7 918 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 PPFIA3O75145 1194 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 CALM1P0DP23 149 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 CALM2P0DP24 149 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 CALM3P0DP25 149 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 SBK1Q52WX2 424 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 RESP18Q5W5W9 173 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 FANCBQ8NB91 859 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 AIFM3Q96NN9 605 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 A0A1B0GVL5 298 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 GOLGA6L19H0YKK7 550 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 ZNF202O95125 648 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 NOSTRINQ8IVI9 506 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 UBAC1Q9BSL1 405 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 SLC26A6Q9BXS9 759 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 GJB4Q9NTQ9 266 aa14.12□□□□□ -0.15
PTPRF-212ENST00000477970 RBM28Q9NW13 759 aaKnown RBP14.12□□□□□ -0.15
PTPRF-212ENST00000477970 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.12□□□□□ -0.15
PTPRF-212ENST00000477970 PFKFB1P16118 471 aa14.11□□□□□ -0.15
PTPRF-212ENST00000477970 GTF2E1P29083 439 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-212ENST00000477970 TTC12Q9H892 705 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-212ENST00000477970 ATP8A2Q9NTI2 1148 aa14.11□□□□□ -0.15
PTPRF-212ENST00000477970 GNPATO15228 680 aa14.11□□□□□ -0.15
PTPRF-212ENST00000477970 WDHD1O75717 1129 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-212ENST00000477970 DDAH1O94760 285 aa14.11□□□□□ -0.15
PTPRF-212ENST00000477970 RXRAP19793 462 aa14.11□□□□□ -0.15
PTPRF-212ENST00000477970 HIBADHP31937 336 aaKnown RBP14.11□□□□□ -0.15
PTPRF-212ENST00000477970 AMIGO3Q86WK7 504 aa14.11□□□□□ -0.15
PTPRF-212ENST00000477970 ABCF2Q9UG63 623 aa14.11□□□□□ -0.15
PTPRF-212ENST00000477970 TUBE1Q9UJT0 475 aa14.11□□□□□ -0.15
PTPRF-212ENST00000477970 SAFBQ15424 915 aaKnown RBP eCLIP14.1□□□□□ -0.15
PTPRF-212ENST00000477970 RILPL1Q5EBL4 403 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 ZSCAN10Q96SZ4 725 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-212ENST00000477970 MYH2Q9UKX2 1941 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 MROH7-TTC4A0A0A0MT08 1334 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 TNKSO95271 1327 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 LRRC37AA6NMS7 1700 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.1□□□□□ -0.15
PTPRF-212ENST00000477970 NEMFO60524 1076 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 NLRP12P59046 1061 aa14.1□□□□□ -0.15
PTPRF-212ENST00000477970 SPTY2D1Q68D10 685 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-212ENST00000477970 SDR42E1Q8WUS8 393 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms