RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 BRIP1Q9BX63 1249 aa16.19■□□□□ 0.18
SNCA-204ENST00000394989 ANKRD2Q9GZV1 360 aa16.19■□□□□ 0.18
SNCA-204ENST00000394989 SART3Q15020 963 aaKnown RBP16.18■□□□□ 0.18
SNCA-204ENST00000394989 FAM196AQ6ZSG2 479 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 MROH7-TTC4A0A0A0MT08 1334 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 RFC4P35249 363 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 SSRP1Q08945 709 aaKnown RBP16.18■□□□□ 0.18
SNCA-204ENST00000394989 NFIXQ14938 502 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 SF3A1Q15459 793 aaKnown RBP16.18■□□□□ 0.18
SNCA-204ENST00000394989 MAP3K14Q99558 947 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 TNKSO95271 1327 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 ONECUT3O60422 494 aaPredicted RBP16.18■□□□□ 0.18
SNCA-204ENST00000394989 SLC39A14Q15043 492 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 IQCB1Q15051 598 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 RTN1Q16799 776 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 TRAPPC3LQ5T215 181 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 CTR9Q6PD62 1173 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 JAG2Q9Y219 1238 aa16.18■□□□□ 0.18
SNCA-204ENST00000394989 PTPAQ15257 358 aa16.17■□□□□ 0.18
SNCA-204ENST00000394989 ZNF654Q8IZM8 581 aa16.17■□□□□ 0.18
SNCA-204ENST00000394989 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.17■□□□□ 0.18
SNCA-204ENST00000394989 ERICH2A1L162 156 aa16.17■□□□□ 0.18
SNCA-204ENST00000394989 FGRP09769 529 aa16.17■□□□□ 0.18
SNCA-204ENST00000394989 MARCKSP29966 332 aaPredicted RBP16.17■□□□□ 0.18
SNCA-204ENST00000394989 CCDC82Q8N4S0 544 aa16.17■□□□□ 0.18
SNCA-204ENST00000394989 ESR2Q92731 530 aa16.17■□□□□ 0.18
SNCA-204ENST00000394989 AATFQ9NY61 560 aaKnown RBP eCLIP16.17■□□□□ 0.18
SNCA-204ENST00000394989 MAST2Q6P0Q8 1798 aa16.17■□□□□ 0.18
SNCA-204ENST00000394989 ENAHQ8N8S7 591 aaPredicted RBP16.16■□□□□ 0.18
SNCA-204ENST00000394989 FANCBQ8NB91 859 aa16.16■□□□□ 0.18
SNCA-204ENST00000394989 UBAC1Q9BSL1 405 aa16.16■□□□□ 0.18
SNCA-204ENST00000394989 AFF2P51816 1311 aa16.16■□□□□ 0.18
SNCA-204ENST00000394989 PRDM1O75626 825 aa16.16■□□□□ 0.18
SNCA-204ENST00000394989 CHAF1AQ13111 956 aaPredicted RBP16.16■□□□□ 0.18
SNCA-204ENST00000394989 TMTC2Q8N394 836 aa16.16■□□□□ 0.18
SNCA-204ENST00000394989 CRACR2BQ8N4Y2 399 aaPredicted RBP16.16■□□□□ 0.18
SNCA-204ENST00000394989 SPDYE4A6NLX3 237 aa16.16■□□□□ 0.18
SNCA-204ENST00000394989 STX1AQ16623 288 aa16.16■□□□□ 0.18
SNCA-204ENST00000394989 SPC24Q8NBT2 197 aa16.16■□□□□ 0.18
SNCA-204ENST00000394989 KCNF1Q9H3M0 494 aa16.16■□□□□ 0.18
SNCA-204ENST00000394989 DLEC1Q9Y238 1755 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 CCDC88AQ3V6T2 1871 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 USP17L12C9JPN9 530 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 USP17L21D6R901 530 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 RCAN1P53805 252 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 NUP133Q8WUM0 1156 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 LAMB1P07942 1786 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 KIAA1551Q9HCM1 1747 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 UBR3Q6ZT12 1888 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 CAVIN2O95810 425 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 MMP1P03956 469 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 TRIM29Q14134 588 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 PLA2G4DQ86XP0 818 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 SEPT12Q8IYM1 358 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 SHISA4Q96DD7 197 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 ZSCAN10Q96SZ4 725 aaPredicted RBP16.15■□□□□ 0.18
SNCA-204ENST00000394989 DCP1AQ9NPI6 582 aaPredicted RBP16.15■□□□□ 0.18
SNCA-204ENST00000394989 KCNJ14Q9UNX9 436 aa16.15■□□□□ 0.18
SNCA-204ENST00000394989 BTBD18B2RXH4 712 aa16.14■□□□□ 0.17
SNCA-204ENST00000394989 PFKFB1P16118 471 aa16.14■□□□□ 0.17
SNCA-204ENST00000394989 CMA1P23946 247 aa16.14■□□□□ 0.17
SNCA-204ENST00000394989 NPHP1O15259 732 aa16.14■□□□□ 0.17
SNCA-204ENST00000394989 MEX3CQ5U5Q3 659 aaKnown RBP16.14■□□□□ 0.17
SNCA-204ENST00000394989 PPP6R2O75170 966 aa16.14■□□□□ 0.17
SNCA-204ENST00000394989 ZNF202O95125 648 aa16.14■□□□□ 0.17
SNCA-204ENST00000394989 KIAA2012Q0VF49 1180 aa16.14■□□□□ 0.17
SNCA-204ENST00000394989 GRAPQ13588 217 aa16.14■□□□□ 0.17
SNCA-204ENST00000394989 GNL2Q13823 731 aaKnown RBP16.14■□□□□ 0.17
SNCA-204ENST00000394989 SHC4Q6S5L8 630 aa16.14■□□□□ 0.17
SNCA-204ENST00000394989 GRAPLQ8TC17 118 aaPredicted RBP16.14■□□□□ 0.17
SNCA-204ENST00000394989 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.14■□□□□ 0.17
SNCA-204ENST00000394989 TOB1P50616 345 aaPredicted RBP16.13■□□□□ 0.17
SNCA-204ENST00000394989 NOSTRINQ8IVI9 506 aa16.13■□□□□ 0.17
SNCA-204ENST00000394989 DHX40Q8IX18 779 aaKnown RBP16.13■□□□□ 0.17
SNCA-204ENST00000394989 CNBD1Q8NA66 436 aa16.13■□□□□ 0.17
SNCA-204ENST00000394989 SDF4Q9BRK5 362 aa16.13■□□□□ 0.17
SNCA-204ENST00000394989 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.13■□□□□ 0.17
SNCA-204ENST00000394989 DEXIO95424 95 aa16.13■□□□□ 0.17
SNCA-204ENST00000394989 FUT2Q10981 343 aa16.13■□□□□ 0.17
SNCA-204ENST00000394989 PRR5LQ6MZQ0 368 aa16.13■□□□□ 0.17
SNCA-204ENST00000394989 TRIM22Q8IYM9 498 aa16.13■□□□□ 0.17
SNCA-204ENST00000394989 WASF1Q92558 559 aa16.13■□□□□ 0.17
SNCA-204ENST00000394989 MAP7D2Q96T17 732 aa16.13■□□□□ 0.17
SNCA-204ENST00000394989 MYH6P13533 1939 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 CCDC196A0A1B0GTZ2 297 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 ZBTB22O15209 634 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 ZNF75DP51815 510 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 DIS3L2Q8IYB7 885 aaKnown RBP16.12■□□□□ 0.17
SNCA-204ENST00000394989 PIBF1Q8WXW3 757 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.12■□□□□ 0.17
SNCA-204ENST00000394989 KIAA1468Q9P260 1216 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 ANKIB1Q9P2G1 1089 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 HPSEQ9Y251 543 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 CYP2D6P10635 497 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 TROAPQ12815 778 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 CLIC6Q96NY7 704 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 GPR101Q96P66 508 aaPredicted RBP16.12■□□□□ 0.17
SNCA-204ENST00000394989 ANO10Q9NW15 660 aa16.12■□□□□ 0.17
SNCA-204ENST00000394989 NMT2O60551 498 aa16.11■□□□□ 0.17
SNCA-204ENST00000394989 HSPA1LP34931 641 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms