RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SARM1Q6SZW1 724 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 SEPT12Q8IYM1 358 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 IGDCC4Q8TDY8 1250 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 KCNF1Q9H3M0 494 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 DENND2AQ9ULE3 1009 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 SLIT2O94813 1529 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 CMA1P23946 247 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 AOPEPQ8N6M6 819 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 UBAC1Q9BSL1 405 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 LY9Q9HBG7 655 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 ZSWIM5Q9P217 1185 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 KIAA1468Q9P260 1216 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 DOT1LQ8TEK3 1739 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 PLCH1Q4KWH8 1693 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 KIF28PB7ZC32 967 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 ZNF202O95125 648 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 TNNT1P13805 278 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 MARCKSP29966 332 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-204ENST00000392003 SLC39A14Q15043 492 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 RTN1Q16799 776 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 MIGA1Q8NAN2 632 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 MRFAP1L1Q96HT8 127 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 MYL10Q9BUA6 226 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 EPB41L4AQ9HCS5 686 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-204ENST00000392003 RTL9Q8NET4 1388 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 PNPLA7Q6ZV29 1317 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 GSG1L2A8MUP6 293 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 NEMFO60524 1076 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 TBC1D9BQ66K14 1250 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 STK11IPQ8N1F8 1099 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 MYRIPQ8NFW9 859 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 AIFM3Q96NN9 605 aa11.11□□□□□ -0.63
COL6A3-204ENST00000392003 QTRT2Q9H974 415 aaKnown RBP11.11□□□□□ -0.63
COL6A3-204ENST00000392003 COL16A1Q07092 1604 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-204ENST00000392003 MINDY4BA8MYZ0 360 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 CDC27P30260 824 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 SYKP43405 635 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 AKAP17AQ02040 695 aaKnown RBP11.1□□□□□ -0.63
COL6A3-204ENST00000392003 LCORLQ8N3X6 602 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 RNF217Q8TC41 542 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.1□□□□□ -0.63
COL6A3-204ENST00000392003 NARFQ9UHQ1 456 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 MAGEB6P1A0A0J9YX57 407 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 SMTNL1A8MU46 457 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 INCENPQ9NQS7 918 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 STK36Q9NRP7 1315 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 PRKAB2O43741 272 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 PFKFB1P16118 471 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 NUP133Q8WUM0 1156 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 STAG1Q8WVM7 1258 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 ERCC4Q92889 916 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-204ENST00000392003 NRBP1Q9UHY1 535 aa11.1□□□□□ -0.63
COL6A3-204ENST00000392003 NRDCO43847 1150 aa11.09□□□□□ -0.63
COL6A3-204ENST00000392003 PPP6R2O75170 966 aa11.09□□□□□ -0.63
COL6A3-204ENST00000392003 IFNAR1P17181 557 aa11.09□□□□□ -0.63
COL6A3-204ENST00000392003 UBE4AQ14139 1066 aa11.09□□□□□ -0.63
COL6A3-204ENST00000392003 FAM196AQ6ZSG2 479 aa11.09□□□□□ -0.63
COL6A3-204ENST00000392003 MTA3Q9BTC8 594 aa11.09□□□□□ -0.63
COL6A3-204ENST00000392003 SENP2Q9HC62 589 aa11.09□□□□□ -0.63
COL6A3-204ENST00000392003 FMNL1O95466 1100 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-204ENST00000392003 RPS8P62241 208 aaKnown RBP11.09□□□□□ -0.63
COL6A3-204ENST00000392003 ESR2Q92731 530 aa11.09□□□□□ -0.63
COL6A3-204ENST00000392003 ZKSCAN3Q9BRR0 538 aa11.09□□□□□ -0.63
COL6A3-204ENST00000392003 HOOK1Q9UJC3 728 aaKnown RBP11.09□□□□□ -0.63
COL6A3-204ENST00000392003 BIN1O00499 593 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 GYG1P46976 350 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 NLRP12P59046 1061 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 RBM6P78332 1123 aaKnown RBP11.08□□□□□ -0.64
COL6A3-204ENST00000392003 FILIP1Q7Z7B0 1213 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 TIGD1Q96MW7 591 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 COL22A1Q8NFW1 1626 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-204ENST00000392003 CNTNAP4Q9C0A0 1308 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 BCL9LQ86UU0 1499 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 A0A087WWV3 80 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 XBP1P17861 261 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 PPARAQ07869 468 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 LRMPQ12912 555 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 RC3H1Q5TC82 1133 aaKnown RBP11.08□□□□□ -0.64
COL6A3-204ENST00000392003 ARHGEF1Q92888 912 aaKnown RBP11.08□□□□□ -0.64
COL6A3-204ENST00000392003 LRP5O75197 1615 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 CUTAO60888 179 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 NTRK3Q16288 839 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 TPD52L1Q16890 204 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-204ENST00000392003 DNAJC21Q5F1R6 531 aaKnown RBP11.08□□□□□ -0.64
COL6A3-204ENST00000392003 DHX40Q8IX18 779 aaKnown RBP11.08□□□□□ -0.64
COL6A3-204ENST00000392003 CCDC82Q8N4S0 544 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.08□□□□□ -0.64
COL6A3-204ENST00000392003 ANKIB1Q9P2G1 1089 aa11.08□□□□□ -0.64
COL6A3-204ENST00000392003 MYO5AQ9Y4I1 1855 aaKnown RBP11.08□□□□□ -0.64
COL6A3-204ENST00000392003 SMC2O95347 1197 aa11.07□□□□□ -0.64
COL6A3-204ENST00000392003 DEXIO95424 95 aa11.07□□□□□ -0.64
COL6A3-204ENST00000392003 U2AF2P26368 475 aaKnown RBP eCLIP11.07□□□□□ -0.64
COL6A3-204ENST00000392003 GSDMDP57764 484 aa11.07□□□□□ -0.64
COL6A3-204ENST00000392003 DHX8Q14562 1220 aaKnown RBP11.07□□□□□ -0.64
COL6A3-204ENST00000392003 OLFM4Q6UX06 510 aa11.07□□□□□ -0.64
COL6A3-204ENST00000392003 RANBP6O60518 1105 aaKnown RBP11.07□□□□□ -0.64
COL6A3-204ENST00000392003 PPP2R5BQ15173 497 aa11.07□□□□□ -0.64
COL6A3-204ENST00000392003 NOSTRINQ8IVI9 506 aa11.07□□□□□ -0.64
COL6A3-204ENST00000392003 DIS3L2Q8IYB7 885 aaKnown RBP11.07□□□□□ -0.64
COL6A3-204ENST00000392003 ZNF654Q8IZM8 581 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms