RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Dkk4Q8VEJ3 221 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ighv3-8A0A075B5T0 131 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Lyzl4Q9D925 145 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ly6g5bQ8K1T4 194 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 SbpP15501 199 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ighv1-9A0A0A6YW37 117 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm26727M0QWT1 121 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm37988J3QM41 62 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Brd3osA0A1B0GRB6 84 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm11733Q8BQP1 125 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Dpm3Q9D1Q4 92 aa12.22□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 AcacbE9Q4Z2 2448 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Trav14-2A0A075B694 121 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm5294J3QP53 216 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 P04943 107 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ighv1-49A0A0A6YWX2 117 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Tm2d1Q99MB3 208 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Mlst8Q9DCJ1 326 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Dopey1Q8BL99 2399 aa12.21□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Tns1E9Q0S6 1888 aaKnown RBP12.21□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm11020F6ZGD5 61 aa12.21□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Tmem210Q9D2F0 147 aa12.21□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Trbv30A0A0B4J1P1 111 aa12.2□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm16381A0A1Y7VKT9 73 aa12.2□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Mki67E9PVX6 3177 aaKnown RBP12.2□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Spink1P09036 80 aa12.2□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 9130230L23RikQ8CC80 163 aa12.2□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 OtoglF7A4A7 2325 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ccl25O35903 144 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 P01802 115 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Tomm7Q9D173 55 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ighv6-7A0A0A6YWU3 119 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm10775Q3V290 127 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Trav14d-1A0A075B6B1 121 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Samd13D3YUG0 102 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Rpl32-psP17932 135 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Pla2g2aP31482 146 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Samd5Q3V1H9 173 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ociad2Q9D8W7 154 aa12.19□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm28038F7BCN9 126 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Sap30O88574 220 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Crip1P63254 77 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Oxld1Q9CR10 201 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 CenpfE9Q3P4 2997 aaKnown RBP12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Igkv4-70A0A0B4J1I5 116 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm7075D3Z497 112 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 P01791 123 aa12.18□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Clec5aQ9R007 190 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 NrgnP60761 78 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 9230109A22RikQ8BHE6 111 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ube2wQ8VDW4 151 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Taf15Q8BQ46 557 aaKnown RBP12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Spg11Q3UHA3 2430 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Trav3-4A0A075B654 114 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ighv1-74A0A0G2JGK2 117 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 E030018B13RikJ3QMS9 113 aa12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ndufa4Q62425 82 aaKnown RBP12.17□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 DysfQ9ESD7 2090 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Dph3Q8K0W9 82 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 4930442H23RikQ9D5G7 103 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 H2-DMb1P35737 261 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 P01674 108 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 MrapQ9D159 127 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Hrct1Q9D6B9 109 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Sptbn4E9PX29 2561 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Hist1h4aP62806 103 aaKnown RBP12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ang5Q5GAN1 145 aa12.16□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ighv1-4A0A075B5T4 117 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Lce6aD3YV94 81 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 March3Q8BRX9 218 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Cd24P24807 76 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Pglyrp4Q0VB07 374 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm9961Q8BNV2 113 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ighv8-8A0A0A6YXQ0 119 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Gm2564F6Z9S8 108 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Ccl19O70460 108 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Wfdc2Q9DAU7 174 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 NbasE9Q411 2356 aa12.15□□□□□ -0.46
Ccdc88b-201ENSMUST00000113440 Igkv4-81A0A0G2JEY5 119 aa12.15□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Mapk1ip1lQ8BH93 242 aa12.15□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 NpbQ8K4P1 119 aa12.15□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 PmvkQ9D1G2 192 aa12.15□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 P01741 114 aa12.14□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Cysrt1Q9D1E4 142 aa12.14□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 HampQ9EQ21 83 aa12.14□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Cox11Q6P8I6 275 aa12.14□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Trav4n-4A0A075B615 110 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ighv8-4A0A0A6YW26 117 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 PkigO70139 76 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 CrygbP04344 175 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Gata4Q08369 441 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ypel4Q65Z93 127 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 H1fxQ80ZM5 188 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ankrd39Q9D2X0 183 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Tax1bp3Q9DBG9 124 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Pygo2Q80V76 405 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Shisal2aA2A9G7 189 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Fam24aQ8CF27 98 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Cdpf1Q8R3A2 119 aa12.13□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 NpsP0C0P8 89 aa12.12□□□□□ -0.47
Retrieved 100 of 22,080 RNA–protein pairs in 51.7 ms