RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Ighv1-74A0A0G2JGK2 117 aa12.52□□□□□ -0.4
Shh-201ENSMUST00000002708 Hoxc12Q8K5B8 280 aa12.52□□□□□ -0.4
Shh-201ENSMUST00000002708 Tcrg-V6A0A075B5Y8 134 aa12.52□□□□□ -0.41
Shh-201ENSMUST00000002708 1700067P10RikG3X8U2 183 aa12.52□□□□□ -0.41
Shh-201ENSMUST00000002708 NrgnP60761 78 aa12.52□□□□□ -0.41
Shh-201ENSMUST00000002708 PlnP61014 52 aa12.52□□□□□ -0.41
Shh-201ENSMUST00000002708 Obox8V9GWY9 217 aa12.52□□□□□ -0.41
Shh-201ENSMUST00000002708 Gm15557A6PWY0 234 aa12.52□□□□□ -0.41
Shh-201ENSMUST00000002708 Fam240bJ3QMB3 78 aa12.52□□□□□ -0.41
Shh-201ENSMUST00000002708 S100a8P27005 89 aa12.52□□□□□ -0.41
Shh-201ENSMUST00000002708 Atp5iQ06185 71 aaKnown RBP12.52□□□□□ -0.41
Shh-201ENSMUST00000002708 Fhl1P97447 280 aaKnown RBP12.51□□□□□ -0.41
Shh-201ENSMUST00000002708 Gm17334Q8C6U3 126 aa12.51□□□□□ -0.41
Shh-201ENSMUST00000002708 Gtf2h5Q8K2X8 71 aa12.51□□□□□ -0.41
Shh-201ENSMUST00000002708 Gpx7Q99LJ6 186 aa12.51□□□□□ -0.41
Shh-201ENSMUST00000002708 Trav8-1A0A075B641 109 aa12.51□□□□□ -0.41
Shh-201ENSMUST00000002708 Bak1O08734 209 aa12.51□□□□□ -0.41
Shh-201ENSMUST00000002708 Gosr1O88630 250 aa12.51□□□□□ -0.41
Shh-201ENSMUST00000002708 P18527 97 aa12.51□□□□□ -0.41
Shh-201ENSMUST00000002708 AW146154Q3TPQ7 468 aa12.51□□□□□ -0.41
Shh-201ENSMUST00000002708 NbasE9Q411 2356 aa12.5□□□□□ -0.41
Shh-201ENSMUST00000002708 CnfnQ6PCW6 111 aa12.5□□□□□ -0.41
Shh-201ENSMUST00000002708 Try10Q792Z1 246 aaKnown RBP12.5□□□□□ -0.41
Shh-201ENSMUST00000002708 A130051J06RikQ8CAU1 227 aa12.5□□□□□ -0.41
Shh-201ENSMUST00000002708 Ighv1-62-3P01754 117 aa12.49□□□□□ -0.41
Shh-201ENSMUST00000002708 Kmt2bO08550 2713 aa12.49□□□□□ -0.41
Shh-201ENSMUST00000002708 Hrct1Q9D6B9 109 aa12.49□□□□□ -0.41
Shh-201ENSMUST00000002708 Lelp1Q9DAE3 120 aa12.49□□□□□ -0.41
Shh-201ENSMUST00000002708 Snai3Q9QY31 287 aa12.49□□□□□ -0.41
Shh-201ENSMUST00000002708 Rs1Q9Z1L4 224 aa12.49□□□□□ -0.41
Shh-201ENSMUST00000002708 Ighv1-23A0A0A6YVW3 117 aa12.48□□□□□ -0.41
Shh-201ENSMUST00000002708 A730046J19RikA0A1B0GSN8 89 aa12.48□□□□□ -0.41
Shh-201ENSMUST00000002708 Mob4Q6PEB6 225 aa12.48□□□□□ -0.41
Shh-201ENSMUST00000002708 Gkn1Q9CR36 201 aa12.48□□□□□ -0.41
Shh-201ENSMUST00000002708 Gm12845A0A0N4SUM5 588 aa12.48□□□□□ -0.41
Shh-201ENSMUST00000002708 TshbP12656 138 aa12.48□□□□□ -0.41
Shh-201ENSMUST00000002708 Edn2P22389 175 aa12.48□□□□□ -0.41
Shh-201ENSMUST00000002708 Cxcl14Q9WUQ5 99 aa12.48□□□□□ -0.41
Shh-201ENSMUST00000002708 Tmem238A9JSM3 176 aa12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 Crip3Q6Q6R3 243 aa12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 Ighv1-22A0A075B5U7 117 aa12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 Ighv1-53A0A075B5W3 117 aa12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 Ndufa1O35683 70 aa12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 Prr3Q811B5 190 aaKnown RBP12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 P01741 114 aa12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 Spink13Q3UTS8 97 aa12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 Ang5Q5GAN1 145 aa12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 Trav7-2Q5R1I3 112 aa12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 Cox11Q6P8I6 275 aa12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 Prr9Q8BV84 116 aa12.47□□□□□ -0.41
Shh-201ENSMUST00000002708 Sorl1O88307 2215 aaKnown RBP12.46□□□□□ -0.41
Shh-201ENSMUST00000002708 Brd3osA0A1B0GRB6 84 aa12.46□□□□□ -0.41
Shh-201ENSMUST00000002708 Socs3O35718 225 aa12.46□□□□□ -0.41
Shh-201ENSMUST00000002708 Ighv3-4A0A0A6YXF1 117 aa12.46□□□□□ -0.42
Shh-201ENSMUST00000002708 Igkv4-71A0A0G2JEH0 117 aa12.46□□□□□ -0.42
Shh-201ENSMUST00000002708 Atxn7l1Q9CZ05 146 aa12.46□□□□□ -0.42
Shh-201ENSMUST00000002708 Gm26938S4R185 226 aa12.46□□□□□ -0.42
Shh-201ENSMUST00000002708 Tcf24V9GWT9 166 aa12.46□□□□□ -0.42
Shh-201ENSMUST00000002708 Hspe1Q64433 102 aaKnown RBP12.45□□□□□ -0.42
Shh-201ENSMUST00000002708 Arl3Q9WUL7 182 aa12.45□□□□□ -0.42
Shh-201ENSMUST00000002708 Trbv13-1A0A0B4J1P8 112 aa12.45□□□□□ -0.42
Shh-201ENSMUST00000002708 Gm5878E9PUB3 99 aa12.45□□□□□ -0.42
Shh-201ENSMUST00000002708 Gm17430F6RSK3 157 aa12.45□□□□□ -0.42
Shh-201ENSMUST00000002708 Hist1h1tQ07133 208 aa12.45□□□□□ -0.42
Shh-201ENSMUST00000002708 Hif1anQ8BLR9 349 aa12.45□□□□□ -0.42
Shh-201ENSMUST00000002708 Akap6E9Q9K8 2307 aa12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 Cks1brtQ3UNC9 96 aa12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 Srsf2Q62093 221 aaKnown RBP12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 Gm14137Q8CE97 175 aa12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 Gm44965A0A0N4SVR3 59 aa12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 P01820 115 aa12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 Hint1P70349 126 aaKnown RBP12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 Olfr312Q7TRZ9 308 aa12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 Rasl11bQ922H7 247 aa12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 Spink12Q9D256 87 aa12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 Mettl26Q9DCS2 204 aa12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 HilpdaQ9JLS0 64 aa12.44□□□□□ -0.42
Shh-201ENSMUST00000002708 Iglc1A0A0G2JE99 106 aa12.43□□□□□ -0.42
Shh-201ENSMUST00000002708 P01843 105 aa12.43□□□□□ -0.42
Shh-201ENSMUST00000002708 Psmg4P0C7N9 123 aa12.43□□□□□ -0.42
Shh-201ENSMUST00000002708 Olfr311Q5NC59 308 aa12.43□□□□□ -0.42
Shh-201ENSMUST00000002708 Slamf6Q9ET39 351 aa12.43□□□□□ -0.42
Shh-201ENSMUST00000002708 Utp20Q5XG71 2788 aaKnown RBP12.43□□□□□ -0.42
Shh-201ENSMUST00000002708 Igkv20-101-2A0A0G2JDU3 113 aa12.43□□□□□ -0.42
Shh-201ENSMUST00000002708 Ins2P01326 110 aa12.43□□□□□ -0.42
Shh-201ENSMUST00000002708 PolP10400 120 aa12.43□□□□□ -0.42
Shh-201ENSMUST00000002708 Abca2P41234 2434 aa12.43□□□□□ -0.42
Shh-201ENSMUST00000002708 Gm9925F6T2U3 160 aa12.43□□□□□ -0.42
Shh-201ENSMUST00000002708 Tmem238lA0A1B0GS74 79 aa12.42□□□□□ -0.42
Shh-201ENSMUST00000002708 S100a4P07091 101 aa12.42□□□□□ -0.42
Shh-201ENSMUST00000002708 Zfp248Q640N4 576 aa12.42□□□□□ -0.42
Shh-201ENSMUST00000002708 Tnfrsf23Q9ER63 176 aa12.42□□□□□ -0.42
Shh-201ENSMUST00000002708 Gm10521E9PZK0 135 aa12.42□□□□□ -0.42
Shh-201ENSMUST00000002708 Defa37K9J724 93 aa12.42□□□□□ -0.42
Shh-201ENSMUST00000002708 Defa5P28312 93 aa12.42□□□□□ -0.42
Shh-201ENSMUST00000002708 BlcapP62951 87 aa12.42□□□□□ -0.42
Shh-201ENSMUST00000002708 Q4KKZ1 196 aa12.42□□□□□ -0.42
Shh-201ENSMUST00000002708 Mrpl36Q99N90 102 aa12.42□□□□□ -0.42
Shh-201ENSMUST00000002708 Ighv1-80A0A075B5Y3 117 aa12.41□□□□□ -0.42
Shh-201ENSMUST00000002708 Odf1Q61999 247 aa12.41□□□□□ -0.42
Retrieved 100 of 22,080 RNA–protein pairs in 68.1 ms