RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 KIAA1109Q2LD37 5005 aa1.68□□□□□ -2.14
SCN1A-218ENST00000640036 LCE3EQ5T5B0 92 aa1.67□□□□□ -2.14
SCN1A-218ENST00000640036 ABCA13Q86UQ4 5058 aa1.67□□□□□ -2.14
SCN1A-218ENST00000640036 LCE4AQ5TA78 99 aa1.66□□□□□ -2.14
SCN1A-218ENST00000640036 SYNE1Q8NF91 8797 aaKnown RBP1.65□□□□□ -2.15
SCN1A-218ENST00000640036 MT1LQ93083 61 aa1.64□□□□□ -2.15
SCN1A-218ENST00000640036 LCE1DQ5T752 114 aa1.64□□□□□ -2.15
SCN1A-218ENST00000640036 LCE1BQ5T7P3 118 aa1.64□□□□□ -2.15
SCN1A-218ENST00000640036 EPPK1P58107 5090 aaKnown RBP1.63□□□□□ -2.15
SCN1A-218ENST00000640036 MT1EP04732 61 aa1.62□□□□□ -2.15
SCN1A-218ENST00000640036 UBR4Q5T4S7 5183 aa1.62□□□□□ -2.15
SCN1A-218ENST00000640036 TNXBP22105 4242 aa1.62□□□□□ -2.15
SCN1A-218ENST00000640036 LCE5AQ5TCM9 118 aa1.61□□□□□ -2.15
SCN1A-218ENST00000640036 MT1MQ8N339 61 aa1.6□□□□□ -2.15
SCN1A-218ENST00000640036 KRTAP19-2Q3LHN2 52 aa1.59□□□□□ -2.15
SCN1A-218ENST00000640036 HMCN2Q8NDA2 5059 aa1.59□□□□□ -2.15
SCN1A-218ENST00000640036 FSIP2Q5CZC0 6907 aa1.59□□□□□ -2.16
SCN1A-218ENST00000640036 SYNE2Q8WXH0 6885 aaKnown RBP1.58□□□□□ -2.16
SCN1A-218ENST00000640036 LPAP08519 4548 aa1.58□□□□□ -2.16
SCN1A-218ENST00000640036 KRTAP4-9Q9BYQ8 210 aa1.58□□□□□ -2.16
SCN1A-218ENST00000640036 MACF1Q9UPN3 7388 aaKnown RBP1.58□□□□□ -2.16
SCN1A-218ENST00000640036 HERC1Q15751 4861 aa1.56□□□□□ -2.16
SCN1A-218ENST00000640036 KRTAP9-9Q9BYP9 154 aa1.55□□□□□ -2.16
SCN1A-218ENST00000640036 KRTAP4-7Q9BYR0 210 aa1.53□□□□□ -2.16
SCN1A-218ENST00000640036 LCE1CQ5T751 118 aa1.51□□□□□ -2.17
SCN1A-218ENST00000640036 LCE1EQ5T753 118 aa1.51□□□□□ -2.17
SCN1A-218ENST00000640036 LCE1FQ5T754 118 aa1.51□□□□□ -2.17
SCN1A-218ENST00000640036 RNF213Q63HN8 5207 aa1.5□□□□□ -2.17
SCN1A-218ENST00000640036 MT1AP04731 61 aa1.48□□□□□ -2.17
SCN1A-218ENST00000640036 GPR98Q8WXG9 6306 aa1.48□□□□□ -2.17
SCN1A-218ENST00000640036 KRTAP9-4Q9BYQ2 154 aa1.46□□□□□ -2.18
SCN1A-218ENST00000640036 LOC100996750A0A140TA64 210 aa1.45□□□□□ -2.18
SCN1A-218ENST00000640036 KRTAP4-3Q9BYR4 195 aa1.45□□□□□ -2.18
SCN1A-218ENST00000640036 FAT4Q6V0I7 4981 aa1.44□□□□□ -2.18
SCN1A-218ENST00000640036 PRM1P04553 51 aa1.44□□□□□ -2.18
SCN1A-218ENST00000640036 MUC2Q02817 5179 aa1.44□□□□□ -2.18
SCN1A-218ENST00000640036 KRTAP4-6Q9BYQ5 205 aa1.43□□□□□ -2.18
SCN1A-218ENST00000640036 MUC17Q685J3 4493 aa1.43□□□□□ -2.18
SCN1A-218ENST00000640036 KRTAP19-7Q3SYF9 63 aa1.41□□□□□ -2.18
SCN1A-218ENST00000640036 OBSCNQ5VST9 7968 aa1.4□□□□□ -2.18
SCN1A-218ENST00000640036 KRTAP6-2Q3LI66 62 aa1.39□□□□□ -2.19
SCN1A-218ENST00000640036 KRTAP5-9P26371 169 aa1.38□□□□□ -2.19
SCN1A-218ENST00000640036 DSTQ03001 7570 aaKnown RBP1.38□□□□□ -2.19
SCN1A-218ENST00000640036 KRTAP4-12Q9BQ66 201 aa1.38□□□□□ -2.19
SCN1A-218ENST00000640036 KRTAP5-2Q701N4 177 aa1.36□□□□□ -2.19
SCN1A-218ENST00000640036 NEBP20929 6669 aa1.34□□□□□ -2.2
SCN1A-218ENST00000640036 USH2AO75445 5202 aa1.31□□□□□ -2.2
SCN1A-218ENST00000640036 KRTAP6-1Q3LI64 71 aa1.31□□□□□ -2.2
SCN1A-218ENST00000640036 SSPOA2VEC9 5147 aa1.3□□□□□ -2.2
SCN1A-218ENST00000640036 MUC5BQ9HC84 5762 aaPredicted RBP1.28□□□□□ -2.2
SCN1A-218ENST00000640036 KMT2DO14686 5537 aa1.26□□□□□ -2.21
SCN1A-218ENST00000640036 KRTAP20-2Q3LI61 65 aa1.26□□□□□ -2.21
SCN1A-218ENST00000640036 KRTAP4-11Q9BYQ6 195 aa1.23□□□□□ -2.21
SCN1A-218ENST00000640036 KRTAP5-4Q6L8H1 288 aa1.22□□□□□ -2.21
SCN1A-218ENST00000640036 KRTAP4-2Q9BYR5 136 aa1.22□□□□□ -2.21
SCN1A-218ENST00000640036 KRTAP5-3Q6L8H2 238 aa1.2□□□□□ -2.22
SCN1A-218ENST00000640036 FCGBPQ9Y6R7 5405 aaPredicted RBP1.19□□□□□ -2.22
SCN1A-218ENST00000640036 MDN1Q9NU22 5596 aa1.16□□□□□ -2.22
SCN1A-218ENST00000640036 KRTAP9-6A8MVA2 160 aa1.12□□□□□ -2.23
SCN1A-218ENST00000640036 MUC12Q9UKN1 5478 aa1.11□□□□□ -2.23
SCN1A-218ENST00000640036 MUC19Q7Z5P9 8384 aa1.1□□□□□ -2.23
SCN1A-218ENST00000640036 HMCN1Q96RW7 5635 aa1.09□□□□□ -2.24
SCN1A-218ENST00000640036 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.08□□□□□ -2.24
SCN1A-218ENST00000640036 KRTAP4-4Q9BYR3 166 aa1.07□□□□□ -2.24
SCN1A-218ENST00000640036 KRTAP5-5Q701N2 237 aaPredicted RBP1.05□□□□□ -2.24
SCN1A-218ENST00000640036 AHNAK2Q8IVF2 5795 aa1.05□□□□□ -2.24
SCN1A-218ENST00000640036 PHGR1C9JFL3 82 aa1.05□□□□□ -2.24
SCN1A-218ENST00000640036 KRTAP5-8O75690 187 aa1.02□□□□□ -2.25
SCN1A-218ENST00000640036 MUC5ACP98088 5654 aa1.01□□□□□ -2.25
SCN1A-218ENST00000640036 KRTAP5-7Q6L8G8 165 aa0.93□□□□□ -2.26
SCN1A-218ENST00000640036 KRTAP5-11Q6L8G4 156 aa0.89□□□□□ -2.27
SCN1A-218ENST00000640036 KRTAP5-10Q6L8G5 202 aa0.89□□□□□ -2.27
SCN1A-218ENST00000640036 AHNAKQ09666 5890 aaKnown RBP0.87□□□□□ -2.27
SCN1A-218ENST00000640036 KRTAP5-1Q6L8H4 278 aa0.78□□□□□ -2.28
SCN1A-218ENST00000640036 KRTAP21-1Q3LI58 79 aa0.78□□□□□ -2.28
SCN1A-218ENST00000640036 KRTAP21-2Q3LI59 83 aa0.68□□□□□ -2.3
SCN1A-218ENST00000640036 MUC16Q8WXI7 14507 aa0.62□□□□□ -2.31
Retrieved 77 of 20,778 RNA–protein pairs in 115.8 ms