RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PRM1P04553 51 aa1.85□□□□□ -2.11
SCN1A-216ENST00000637968 LCE4AQ5TA78 99 aa1.85□□□□□ -2.11
SCN1A-216ENST00000637968 MT1BP07438 61 aa1.84□□□□□ -2.11
SCN1A-216ENST00000637968 SPRR2DP22532 72 aa1.84□□□□□ -2.12
SCN1A-216ENST00000637968 KRTAP2-2Q9BYT5 123 aa1.84□□□□□ -2.12
SCN1A-216ENST00000637968 LCE1AQ5T7P2 110 aa1.83□□□□□ -2.12
SCN1A-216ENST00000637968 UBR4Q5T4S7 5183 aa1.81□□□□□ -2.12
SCN1A-216ENST00000637968 MUC17Q685J3 4493 aa1.8□□□□□ -2.12
SCN1A-216ENST00000637968 LCE3EQ5T5B0 92 aa1.8□□□□□ -2.12
SCN1A-216ENST00000637968 MUC2Q02817 5179 aa1.8□□□□□ -2.12
SCN1A-216ENST00000637968 KRTAP19-6Q3LI70 58 aa1.79□□□□□ -2.12
SCN1A-216ENST00000637968 KRTAP4-7Q9BYR0 210 aa1.79□□□□□ -2.12
SCN1A-216ENST00000637968 MT1GP13640 62 aa1.78□□□□□ -2.12
SCN1A-216ENST00000637968 KRTAP6-3Q3LI67 103 aa1.78□□□□□ -2.12
SCN1A-216ENST00000637968 SYNE1Q8NF91 8797 aaKnown RBP1.78□□□□□ -2.12
SCN1A-216ENST00000637968 KRTAP9-7A8MTY7 169 aa1.78□□□□□ -2.12
SCN1A-216ENST00000637968 LCE3DQ9BYE3 92 aa1.78□□□□□ -2.12
SCN1A-216ENST00000637968 KRTAP4-8A0A0G2JLE6 195 aa1.77□□□□□ -2.13
SCN1A-216ENST00000637968 LCE3BQ5TA77 95 aa1.77□□□□□ -2.13
SCN1A-216ENST00000637968 RNF213Q63HN8 5207 aa1.76□□□□□ -2.13
SCN1A-216ENST00000637968 LCE1EQ5T753 118 aa1.74□□□□□ -2.13
SCN1A-216ENST00000637968 GPR98Q8WXG9 6306 aa1.73□□□□□ -2.13
SCN1A-216ENST00000637968 FAT4Q6V0I7 4981 aa1.72□□□□□ -2.13
SCN1A-216ENST00000637968 MT1LQ93083 61 aa1.72□□□□□ -2.13
SCN1A-216ENST00000637968 KRTAP19-3Q7Z4W3 81 aa1.71□□□□□ -2.14
SCN1A-216ENST00000637968 KRTAP4-2Q9BYR5 136 aa1.71□□□□□ -2.14
SCN1A-216ENST00000637968 HMCN2Q8NDA2 5059 aa1.7□□□□□ -2.14
SCN1A-216ENST00000637968 LCE1DQ5T752 114 aa1.69□□□□□ -2.14
SCN1A-216ENST00000637968 MT1EP04732 61 aa1.68□□□□□ -2.14
SCN1A-216ENST00000637968 KRTAP4-9Q9BYQ8 210 aa1.67□□□□□ -2.14
SCN1A-216ENST00000637968 KRTAP20-1Q3LI63 56 aa1.67□□□□□ -2.14
SCN1A-216ENST00000637968 FSIP2Q5CZC0 6907 aa1.66□□□□□ -2.14
SCN1A-216ENST00000637968 MT1AP04731 61 aa1.66□□□□□ -2.14
SCN1A-216ENST00000637968 KRTAP19-7Q3SYF9 63 aa1.65□□□□□ -2.15
SCN1A-216ENST00000637968 MT3P25713 68 aa1.64□□□□□ -2.15
SCN1A-216ENST00000637968 KRTAP4-11Q9BYQ6 195 aa1.63□□□□□ -2.15
SCN1A-216ENST00000637968 LCE5AQ5TCM9 118 aa1.63□□□□□ -2.15
SCN1A-216ENST00000637968 KRTAP6-2Q3LI66 62 aa1.61□□□□□ -2.15
SCN1A-216ENST00000637968 SYNE2Q8WXH0 6885 aaKnown RBP1.61□□□□□ -2.15
SCN1A-216ENST00000637968 MT1MQ8N339 61 aa1.6□□□□□ -2.15
SCN1A-216ENST00000637968 MACF1Q9UPN3 7388 aaKnown RBP1.59□□□□□ -2.16
SCN1A-216ENST00000637968 LCE1FQ5T754 118 aa1.59□□□□□ -2.16
SCN1A-216ENST00000637968 MT4P47944 62 aa1.58□□□□□ -2.16
SCN1A-216ENST00000637968 OBSCNQ5VST9 7968 aa1.58□□□□□ -2.16
SCN1A-216ENST00000637968 KRTAP5-5Q701N2 237 aaPredicted RBP1.56□□□□□ -2.16
SCN1A-216ENST00000637968 KRTAP4-3Q9BYR4 195 aa1.56□□□□□ -2.16
SCN1A-216ENST00000637968 HMCN1Q96RW7 5635 aa1.52□□□□□ -2.17
SCN1A-216ENST00000637968 USH2AO75445 5202 aa1.52□□□□□ -2.17
SCN1A-216ENST00000637968 KMT2DO14686 5537 aa1.52□□□□□ -2.17
SCN1A-216ENST00000637968 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.49□□□□□ -2.17
SCN1A-216ENST00000637968 LCE1BQ5T7P3 118 aa1.47□□□□□ -2.17
SCN1A-216ENST00000637968 KRTAP6-1Q3LI64 71 aa1.44□□□□□ -2.18
SCN1A-216ENST00000637968 NEBP20929 6669 aa1.44□□□□□ -2.18
SCN1A-216ENST00000637968 MUC5BQ9HC84 5762 aaPredicted RBP1.44□□□□□ -2.18
SCN1A-216ENST00000637968 KRTAP5-9P26371 169 aa1.44□□□□□ -2.18
SCN1A-216ENST00000637968 FCGBPQ9Y6R7 5405 aaPredicted RBP1.42□□□□□ -2.18
SCN1A-216ENST00000637968 LCE1CQ5T751 118 aa1.41□□□□□ -2.18
SCN1A-216ENST00000637968 KRTAP5-2Q701N4 177 aa1.41□□□□□ -2.18
SCN1A-216ENST00000637968 SSPOA2VEC9 5147 aa1.4□□□□□ -2.18
SCN1A-216ENST00000637968 DSTQ03001 7570 aaKnown RBP1.36□□□□□ -2.19
SCN1A-216ENST00000637968 MUC19Q7Z5P9 8384 aa1.36□□□□□ -2.19
SCN1A-216ENST00000637968 MDN1Q9NU22 5596 aa1.33□□□□□ -2.2
SCN1A-216ENST00000637968 MUC12Q9UKN1 5478 aa1.29□□□□□ -2.2
SCN1A-216ENST00000637968 KRTAP5-4Q6L8H1 288 aa1.25□□□□□ -2.21
SCN1A-216ENST00000637968 KRTAP20-2Q3LI61 65 aa1.25□□□□□ -2.21
SCN1A-216ENST00000637968 KRTAP5-11Q6L8G4 156 aa1.19□□□□□ -2.22
SCN1A-216ENST00000637968 AHNAK2Q8IVF2 5795 aa1.16□□□□□ -2.22
SCN1A-216ENST00000637968 KRTAP4-4Q9BYR3 166 aa1.11□□□□□ -2.23
SCN1A-216ENST00000637968 KRTAP5-8O75690 187 aa1.1□□□□□ -2.23
SCN1A-216ENST00000637968 KRTAP21-1Q3LI58 79 aa1.08□□□□□ -2.24
SCN1A-216ENST00000637968 KRTAP5-10Q6L8G5 202 aa1.08□□□□□ -2.24
SCN1A-216ENST00000637968 MUC5ACP98088 5654 aa1.02□□□□□ -2.25
SCN1A-216ENST00000637968 KRTAP5-1Q6L8H4 278 aa1.01□□□□□ -2.25
SCN1A-216ENST00000637968 AHNAKQ09666 5890 aaKnown RBP1□□□□□ -2.25
SCN1A-216ENST00000637968 KRTAP5-7Q6L8G8 165 aa0.94□□□□□ -2.26
SCN1A-216ENST00000637968 PHGR1C9JFL3 82 aa0.89□□□□□ -2.27
SCN1A-216ENST00000637968 KRTAP21-2Q3LI59 83 aa0.83□□□□□ -2.28
SCN1A-216ENST00000637968 MUC16Q8WXI7 14507 aa0.57□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 9.1 ms