RNA–Protein interactions for RNA: ENST00000621271.4

CLTCL1-211, Transcript of clathrin heavy chain like 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLTCL1, Length 5,313 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-211ENST00000621271 KRTAP9-7A8MTY7 169 aa3.26□□□□□ -1.89
CLTCL1-211ENST00000621271 LCE3DQ9BYE3 92 aa3.24□□□□□ -1.89
CLTCL1-211ENST00000621271 FSIP2Q5CZC0 6907 aa3.22□□□□□ -1.89
CLTCL1-211ENST00000621271 MT4P47944 62 aa3.22□□□□□ -1.89
CLTCL1-211ENST00000621271 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.19□□□□□ -1.9
CLTCL1-211ENST00000621271 LCE3EQ5T5B0 92 aa3.18□□□□□ -1.9
CLTCL1-211ENST00000621271 MT1LQ93083 61 aa3.17□□□□□ -1.9
CLTCL1-211ENST00000621271 MT1EP04732 61 aa3.17□□□□□ -1.9
CLTCL1-211ENST00000621271 KRTAP6-3Q3LI67 103 aa3.17□□□□□ -1.9
CLTCL1-211ENST00000621271 MT3P25713 68 aa3.13□□□□□ -1.91
CLTCL1-211ENST00000621271 KRTAP4-7Q9BYR0 210 aa3.11□□□□□ -1.91
CLTCL1-211ENST00000621271 MT1MQ8N339 61 aa3.1□□□□□ -1.91
CLTCL1-211ENST00000621271 SYNE1Q8NF91 8797 aaKnown RBP3.09□□□□□ -1.91
CLTCL1-211ENST00000621271 KRTAP20-1Q3LI63 56 aa3.09□□□□□ -1.92
CLTCL1-211ENST00000621271 LCE1BQ5T7P3 118 aa3.03□□□□□ -1.92
CLTCL1-211ENST00000621271 MUC2Q02817 5179 aa3.02□□□□□ -1.93
CLTCL1-211ENST00000621271 LCE1DQ5T752 114 aa3.02□□□□□ -1.93
CLTCL1-211ENST00000621271 SYNE2Q8WXH0 6885 aaKnown RBP3.02□□□□□ -1.93
CLTCL1-211ENST00000621271 KRTAP2-3P0C7H8 128 aa2.99□□□□□ -1.93
CLTCL1-211ENST00000621271 KRTAP2-4Q9BYR9 128 aa2.99□□□□□ -1.93
CLTCL1-211ENST00000621271 LCE1AQ5T7P2 110 aa2.97□□□□□ -1.93
CLTCL1-211ENST00000621271 USH2AO75445 5202 aa2.94□□□□□ -1.94
CLTCL1-211ENST00000621271 KRTAP4-3Q9BYR4 195 aa2.94□□□□□ -1.94
CLTCL1-211ENST00000621271 LOC100996750A0A140TA64 210 aa2.94□□□□□ -1.94
CLTCL1-211ENST00000621271 KRTAP2-1Q9BYU5 128 aa2.9□□□□□ -1.94
CLTCL1-211ENST00000621271 MT1AP04731 61 aa2.89□□□□□ -1.95
CLTCL1-211ENST00000621271 KRTAP2-2Q9BYT5 123 aa2.89□□□□□ -1.95
CLTCL1-211ENST00000621271 LCE5AQ5TCM9 118 aa2.88□□□□□ -1.95
CLTCL1-211ENST00000621271 PRM1P04553 51 aa2.87□□□□□ -1.95
CLTCL1-211ENST00000621271 KRTAP19-7Q3SYF9 63 aa2.86□□□□□ -1.95
CLTCL1-211ENST00000621271 SSPOA2VEC9 5147 aa2.84□□□□□ -1.95
CLTCL1-211ENST00000621271 FCGBPQ9Y6R7 5405 aaPredicted RBP2.84□□□□□ -1.95
CLTCL1-211ENST00000621271 KRTAP5-9P26371 169 aa2.8□□□□□ -1.96
CLTCL1-211ENST00000621271 LCE4AQ5TA78 99 aa2.8□□□□□ -1.96
CLTCL1-211ENST00000621271 KRTAP4-9Q9BYQ8 210 aa2.78□□□□□ -1.96
CLTCL1-211ENST00000621271 KRTAP9-6A8MVA2 160 aa2.76□□□□□ -1.97
CLTCL1-211ENST00000621271 NEBP20929 6669 aa2.76□□□□□ -1.97
CLTCL1-211ENST00000621271 OBSCNQ5VST9 7968 aa2.75□□□□□ -1.97
CLTCL1-211ENST00000621271 MACF1Q9UPN3 7388 aaKnown RBP2.73□□□□□ -1.97
CLTCL1-211ENST00000621271 KRTAP6-2Q3LI66 62 aa2.69□□□□□ -1.98
CLTCL1-211ENST00000621271 KMT2DO14686 5537 aa2.67□□□□□ -1.98
CLTCL1-211ENST00000621271 LCE1CQ5T751 118 aa2.66□□□□□ -1.98
CLTCL1-211ENST00000621271 LCE1EQ5T753 118 aa2.66□□□□□ -1.98
CLTCL1-211ENST00000621271 LCE1FQ5T754 118 aa2.66□□□□□ -1.98
CLTCL1-211ENST00000621271 KRTAP9-4Q9BYQ2 154 aa2.65□□□□□ -1.99
CLTCL1-211ENST00000621271 KRTAP6-1Q3LI64 71 aa2.65□□□□□ -1.99
CLTCL1-211ENST00000621271 MDN1Q9NU22 5596 aa2.58□□□□□ -2
CLTCL1-211ENST00000621271 DSTQ03001 7570 aaKnown RBP2.53□□□□□ -2
CLTCL1-211ENST00000621271 KRTAP9-9Q9BYP9 154 aa2.53□□□□□ -2
CLTCL1-211ENST00000621271 GPR98Q8WXG9 6306 aa2.52□□□□□ -2.01
CLTCL1-211ENST00000621271 MUC12Q9UKN1 5478 aa2.42□□□□□ -2.02
CLTCL1-211ENST00000621271 KRTAP20-2Q3LI61 65 aa2.3□□□□□ -2.04
CLTCL1-211ENST00000621271 KRTAP4-6Q9BYQ5 205 aa2.29□□□□□ -2.04
CLTCL1-211ENST00000621271 KRTAP5-4Q6L8H1 288 aa2.28□□□□□ -2.04
CLTCL1-211ENST00000621271 MUC19Q7Z5P9 8384 aa2.26□□□□□ -2.05
CLTCL1-211ENST00000621271 KRTAP5-3Q6L8H2 238 aa2.15□□□□□ -2.06
CLTCL1-211ENST00000621271 AHNAK2Q8IVF2 5795 aa2.13□□□□□ -2.07
CLTCL1-211ENST00000621271 KRTAP4-11Q9BYQ6 195 aa2.13□□□□□ -2.07
CLTCL1-211ENST00000621271 KRTAP5-5Q701N2 237 aaPredicted RBP2.12□□□□□ -2.07
CLTCL1-211ENST00000621271 KRTAP4-12Q9BQ66 201 aa2.09□□□□□ -2.07
CLTCL1-211ENST00000621271 KRTAP4-2Q9BYR5 136 aa2.09□□□□□ -2.07
CLTCL1-211ENST00000621271 HMCN1Q96RW7 5635 aa2.08□□□□□ -2.08
CLTCL1-211ENST00000621271 KRTAP4-4Q9BYR3 166 aa2.04□□□□□ -2.08
CLTCL1-211ENST00000621271 AHNAKQ09666 5890 aaKnown RBP1.91□□□□□ -2.1
CLTCL1-211ENST00000621271 KRTAP5-2Q701N4 177 aa1.9□□□□□ -2.1
CLTCL1-211ENST00000621271 KRTAP5-7Q6L8G8 165 aa1.89□□□□□ -2.11
CLTCL1-211ENST00000621271 KRTAP5-10Q6L8G5 202 aa1.88□□□□□ -2.11
CLTCL1-211ENST00000621271 KRTAP5-8O75690 187 aa1.88□□□□□ -2.11
CLTCL1-211ENST00000621271 MUC5ACP98088 5654 aa1.87□□□□□ -2.11
CLTCL1-211ENST00000621271 PHGR1C9JFL3 82 aa1.68□□□□□ -2.14
CLTCL1-211ENST00000621271 KRTAP5-1Q6L8H4 278 aa1.67□□□□□ -2.14
CLTCL1-211ENST00000621271 MUC5BQ9HC84 5762 aaPredicted RBP1.62□□□□□ -2.15
CLTCL1-211ENST00000621271 KRTAP5-11Q6L8G4 156 aa1.56□□□□□ -2.16
CLTCL1-211ENST00000621271 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.46□□□□□ -2.18
CLTCL1-211ENST00000621271 KRTAP21-2Q3LI59 83 aa1.37□□□□□ -2.19
CLTCL1-211ENST00000621271 KRTAP21-1Q3LI58 79 aa1.36□□□□□ -2.19
CLTCL1-211ENST00000621271 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 7.1 ms