RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 MT1LQ93083 61 aa3.11□□□□□ -1.91
COL4A6-210ENST00000621266 KRTAP9-7A8MTY7 169 aa3.11□□□□□ -1.91
COL4A6-210ENST00000621266 MT1EP04732 61 aa3.1□□□□□ -1.91
COL4A6-210ENST00000621266 KRTAP19-6Q3LI70 58 aa3.08□□□□□ -1.92
COL4A6-210ENST00000621266 LOC100996750A0A140TA64 210 aa3.04□□□□□ -1.92
COL4A6-210ENST00000621266 LCE1BQ5T7P3 118 aa3.03□□□□□ -1.92
COL4A6-210ENST00000621266 KRTAP4-3Q9BYR4 195 aa3.03□□□□□ -1.92
COL4A6-210ENST00000621266 LCE2AQ5TA79 106 aaPredicted RBP3.01□□□□□ -1.93
COL4A6-210ENST00000621266 MT1MQ8N339 61 aa3□□□□□ -1.93
COL4A6-210ENST00000621266 UBR4Q5T4S7 5183 aa3□□□□□ -1.93
COL4A6-210ENST00000621266 RNF213Q63HN8 5207 aa3□□□□□ -1.93
COL4A6-210ENST00000621266 FAT4Q6V0I7 4981 aa3□□□□□ -1.93
COL4A6-210ENST00000621266 LCE1DQ5T752 114 aa2.97□□□□□ -1.93
COL4A6-210ENST00000621266 MT3P25713 68 aa2.96□□□□□ -1.93
COL4A6-210ENST00000621266 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.95□□□□□ -1.94
COL4A6-210ENST00000621266 KRTAP4-9Q9BYQ8 210 aa2.94□□□□□ -1.94
COL4A6-210ENST00000621266 FSIP2Q5CZC0 6907 aa2.9□□□□□ -1.94
COL4A6-210ENST00000621266 LCE5AQ5TCM9 118 aa2.9□□□□□ -1.94
COL4A6-210ENST00000621266 SYNE1Q8NF91 8797 aaKnown RBP2.89□□□□□ -1.95
COL4A6-210ENST00000621266 KRTAP2-3P0C7H8 128 aa2.88□□□□□ -1.95
COL4A6-210ENST00000621266 KRTAP2-4Q9BYR9 128 aa2.88□□□□□ -1.95
COL4A6-210ENST00000621266 KRTAP19-7Q3SYF9 63 aa2.88□□□□□ -1.95
COL4A6-210ENST00000621266 HMCN2Q8NDA2 5059 aa2.87□□□□□ -1.95
COL4A6-210ENST00000621266 KRTAP6-3Q3LI67 103 aa2.87□□□□□ -1.95
COL4A6-210ENST00000621266 SYNE2Q8WXH0 6885 aaKnown RBP2.81□□□□□ -1.96
COL4A6-210ENST00000621266 MUC2Q02817 5179 aa2.8□□□□□ -1.96
COL4A6-210ENST00000621266 MT1AP04731 61 aa2.79□□□□□ -1.96
COL4A6-210ENST00000621266 KRTAP2-1Q9BYU5 128 aa2.79□□□□□ -1.96
COL4A6-210ENST00000621266 LCE1CQ5T751 118 aa2.78□□□□□ -1.96
COL4A6-210ENST00000621266 LCE1EQ5T753 118 aa2.78□□□□□ -1.96
COL4A6-210ENST00000621266 LCE1FQ5T754 118 aa2.78□□□□□ -1.96
COL4A6-210ENST00000621266 LCE1AQ5T7P2 110 aa2.78□□□□□ -1.96
COL4A6-210ENST00000621266 KRTAP6-2Q3LI66 62 aa2.76□□□□□ -1.97
COL4A6-210ENST00000621266 KRTAP2-2Q9BYT5 123 aa2.75□□□□□ -1.97
COL4A6-210ENST00000621266 LCE4AQ5TA78 99 aa2.66□□□□□ -1.98
COL4A6-210ENST00000621266 OBSCNQ5VST9 7968 aa2.62□□□□□ -1.99
COL4A6-210ENST00000621266 KRTAP6-1Q3LI64 71 aa2.6□□□□□ -1.99
COL4A6-210ENST00000621266 KRTAP9-6A8MVA2 160 aa2.59□□□□□ -1.99
COL4A6-210ENST00000621266 KRTAP9-4Q9BYQ2 154 aa2.56□□□□□ -2
COL4A6-210ENST00000621266 USH2AO75445 5202 aa2.51□□□□□ -2.01
COL4A6-210ENST00000621266 KRTAP9-9Q9BYP9 154 aa2.48□□□□□ -2.01
COL4A6-210ENST00000621266 FCGBPQ9Y6R7 5405 aaPredicted RBP2.43□□□□□ -2.02
COL4A6-210ENST00000621266 KRTAP4-11Q9BYQ6 195 aa2.4□□□□□ -2.02
COL4A6-210ENST00000621266 KRTAP4-6Q9BYQ5 205 aa2.37□□□□□ -2.03
COL4A6-210ENST00000621266 DSTQ03001 7570 aaKnown RBP2.37□□□□□ -2.03
COL4A6-210ENST00000621266 KRTAP5-9P26371 169 aa2.35□□□□□ -2.03
COL4A6-210ENST00000621266 MACF1Q9UPN3 7388 aaKnown RBP2.33□□□□□ -2.04
COL4A6-210ENST00000621266 NEBP20929 6669 aa2.31□□□□□ -2.04
COL4A6-210ENST00000621266 KMT2DO14686 5537 aa2.31□□□□□ -2.04
COL4A6-210ENST00000621266 SSPOA2VEC9 5147 aa2.3□□□□□ -2.04
COL4A6-210ENST00000621266 KRTAP20-2Q3LI61 65 aa2.25□□□□□ -2.05
COL4A6-210ENST00000621266 KRTAP4-12Q9BQ66 201 aa2.21□□□□□ -2.06
COL4A6-210ENST00000621266 KRTAP4-2Q9BYR5 136 aa2.21□□□□□ -2.06
COL4A6-210ENST00000621266 MUC12Q9UKN1 5478 aa2.2□□□□□ -2.06
COL4A6-210ENST00000621266 MDN1Q9NU22 5596 aa2.2□□□□□ -2.06
COL4A6-210ENST00000621266 KRTAP4-4Q9BYR3 166 aa2.14□□□□□ -2.07
COL4A6-210ENST00000621266 KRTAP5-4Q6L8H1 288 aa2.1□□□□□ -2.07
COL4A6-210ENST00000621266 GPR98Q8WXG9 6306 aa2.09□□□□□ -2.07
COL4A6-210ENST00000621266 MUC19Q7Z5P9 8384 aa2.07□□□□□ -2.08
COL4A6-210ENST00000621266 KRTAP5-5Q701N2 237 aaPredicted RBP2□□□□□ -2.09
COL4A6-210ENST00000621266 KRTAP5-3Q6L8H2 238 aa1.89□□□□□ -2.11
COL4A6-210ENST00000621266 MUC5ACP98088 5654 aa1.8□□□□□ -2.12
COL4A6-210ENST00000621266 KRTAP5-8O75690 187 aa1.76□□□□□ -2.13
COL4A6-210ENST00000621266 AHNAK2Q8IVF2 5795 aa1.75□□□□□ -2.13
COL4A6-210ENST00000621266 HMCN1Q96RW7 5635 aa1.74□□□□□ -2.13
COL4A6-210ENST00000621266 PHGR1C9JFL3 82 aa1.72□□□□□ -2.13
COL4A6-210ENST00000621266 KRTAP5-2Q701N4 177 aa1.62□□□□□ -2.15
COL4A6-210ENST00000621266 KRTAP5-10Q6L8G5 202 aa1.55□□□□□ -2.16
COL4A6-210ENST00000621266 MUC5BQ9HC84 5762 aaPredicted RBP1.49□□□□□ -2.17
COL4A6-210ENST00000621266 AHNAKQ09666 5890 aaKnown RBP1.46□□□□□ -2.18
COL4A6-210ENST00000621266 KRTAP5-11Q6L8G4 156 aa1.45□□□□□ -2.18
COL4A6-210ENST00000621266 KRTAP5-1Q6L8H4 278 aa1.42□□□□□ -2.18
COL4A6-210ENST00000621266 KRTAP5-7Q6L8G8 165 aa1.37□□□□□ -2.19
COL4A6-210ENST00000621266 KRTAP21-2Q3LI59 83 aa1.35□□□□□ -2.19
COL4A6-210ENST00000621266 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.29□□□□□ -2.2
COL4A6-210ENST00000621266 KRTAP21-1Q3LI58 79 aa1.28□□□□□ -2.2
COL4A6-210ENST00000621266 MUC16Q8WXI7 14507 aa0.97□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 11.5 ms