RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 C9orf92A6NGG3 77 aa1.91□□□□□ -2.1
SS18-223ENST00000583595 HMCN2Q8NDA2 5059 aa1.91□□□□□ -2.1
SS18-223ENST00000583595 VPS13BQ7Z7G8 4022 aa1.91□□□□□ -2.1
SS18-223ENST00000583595 UBR4Q5T4S7 5183 aa1.9□□□□□ -2.11
SS18-223ENST00000583595 SRRM2Q9UQ35 2752 aaKnown RBP1.88□□□□□ -2.11
SS18-223ENST00000583595 FAT3Q8TDW7 4589 aa1.86□□□□□ -2.11
SS18-223ENST00000583595 HMCN1Q96RW7 5635 aa1.85□□□□□ -2.11
SS18-223ENST00000583595 LRP1Q07954 4544 aaKnown RBP1.85□□□□□ -2.11
SS18-223ENST00000583595 RNF213Q63HN8 5207 aa1.84□□□□□ -2.11
SS18-223ENST00000583595 KRTAP10-4P60372 401 aaPredicted RBP1.84□□□□□ -2.11
SS18-223ENST00000583595 PKHD1L1Q86WI1 4243 aa1.82□□□□□ -2.12
SS18-223ENST00000583595 MT1HL1P0DM35 61 aa1.81□□□□□ -2.12
SS18-223ENST00000583595 KRTAP12-4P60329 112 aa1.81□□□□□ -2.12
SS18-223ENST00000583595 LRP2P98164 4655 aa1.8□□□□□ -2.12
SS18-223ENST00000583595 TNP1P09430 55 aa1.79□□□□□ -2.12
SS18-223ENST00000583595 TNXBP22105 4242 aa1.77□□□□□ -2.13
SS18-223ENST00000583595 KRTAP21-2Q3LI59 83 aa1.74□□□□□ -2.13
SS18-223ENST00000583595 LPAP08519 4548 aa1.71□□□□□ -2.14
SS18-223ENST00000583595 FAT4Q6V0I7 4981 aa1.7□□□□□ -2.14
SS18-223ENST00000583595 MUC2Q02817 5179 aa1.7□□□□□ -2.14
SS18-223ENST00000583595 MUC17Q685J3 4493 aa1.67□□□□□ -2.14
SS18-223ENST00000583595 KRTAP8-1Q8IUC2 63 aa1.6□□□□□ -2.15
SS18-223ENST00000583595 FLGP20930 4061 aaPredicted RBP1.58□□□□□ -2.16
SS18-223ENST00000583595 KRTAP4-1Q9BYQ7 146 aa1.58□□□□□ -2.16
SS18-223ENST00000583595 CRCT1Q9UGL9 99 aa1.58□□□□□ -2.16
SS18-223ENST00000583595 FSIP2Q5CZC0 6907 aa1.57□□□□□ -2.16
SS18-223ENST00000583595 M0R2T5 61 aa1.57□□□□□ -2.16
SS18-223ENST00000583595 MT1HP80294 61 aa1.55□□□□□ -2.16
SS18-223ENST00000583595 KRTAP19-2Q3LHN2 52 aa1.52□□□□□ -2.17
SS18-223ENST00000583595 KRTAP2-3P0C7H8 128 aa1.51□□□□□ -2.17
SS18-223ENST00000583595 KRTAP2-4Q9BYR9 128 aa1.51□□□□□ -2.17
SS18-223ENST00000583595 KRTAP2-1Q9BYU5 128 aa1.51□□□□□ -2.17
SS18-223ENST00000583595 USH2AO75445 5202 aa1.51□□□□□ -2.17
SS18-223ENST00000583595 SSPOA2VEC9 5147 aa1.49□□□□□ -2.17
SS18-223ENST00000583595 SPRR2GQ9BYE4 73 aa1.47□□□□□ -2.17
SS18-223ENST00000583595 FCGBPQ9Y6R7 5405 aaPredicted RBP1.46□□□□□ -2.18
SS18-223ENST00000583595 MT2AP02795 61 aa1.43□□□□□ -2.18
SS18-223ENST00000583595 MT1FP04733 61 aa1.42□□□□□ -2.18
SS18-223ENST00000583595 SYNE2Q8WXH0 6885 aaKnown RBP1.4□□□□□ -2.18
SS18-223ENST00000583595 MACF1Q9UPN3 7388 aaKnown RBP1.39□□□□□ -2.19
SS18-223ENST00000583595 KRTAP19-6Q3LI70 58 aa1.37□□□□□ -2.19
SS18-223ENST00000583595 KRTAP19-5Q3LI72 72 aa1.37□□□□□ -2.19
SS18-223ENST00000583595 KRTAP19-8Q3LI54 63 aa1.36□□□□□ -2.19
SS18-223ENST00000583595 MT1XP80297 61 aa1.35□□□□□ -2.19
SS18-223ENST00000583595 NEBP20929 6669 aa1.35□□□□□ -2.19
SS18-223ENST00000583595 MUC12Q9UKN1 5478 aa1.34□□□□□ -2.2
SS18-223ENST00000583595 MDN1Q9NU22 5596 aa1.32□□□□□ -2.2
SS18-223ENST00000583595 KRTAP20-1Q3LI63 56 aa1.31□□□□□ -2.2
SS18-223ENST00000583595 KMT2DO14686 5537 aa1.29□□□□□ -2.2
SS18-223ENST00000583595 MT1BP07438 61 aa1.29□□□□□ -2.2
SS18-223ENST00000583595 PRM1P04553 51 aa1.25□□□□□ -2.21
SS18-223ENST00000583595 MT1EP04732 61 aa1.24□□□□□ -2.21
SS18-223ENST00000583595 SPRR2EP22531 72 aa1.24□□□□□ -2.21
SS18-223ENST00000583595 SPRR2BP35325 72 aa1.24□□□□□ -2.21
SS18-223ENST00000583595 SPRR2AP35326 72 aa1.24□□□□□ -2.21
SS18-223ENST00000583595 SPRR2FQ96RM1 72 aa1.24□□□□□ -2.21
SS18-223ENST00000583595 MT1AP04731 61 aa1.23□□□□□ -2.21
SS18-223ENST00000583595 MT1LQ93083 61 aa1.22□□□□□ -2.21
SS18-223ENST00000583595 SPRR2DP22532 72 aa1.2□□□□□ -2.22
SS18-223ENST00000583595 KRTAP19-7Q3SYF9 63 aa1.2□□□□□ -2.22
SS18-223ENST00000583595 GPR98Q8WXG9 6306 aa1.18□□□□□ -2.22
SS18-223ENST00000583595 KRTAP6-2Q3LI66 62 aa1.12□□□□□ -2.23
SS18-223ENST00000583595 MT1GP13640 62 aa1.11□□□□□ -2.23
SS18-223ENST00000583595 DSTQ03001 7570 aaKnown RBP1.09□□□□□ -2.23
SS18-223ENST00000583595 KRTAP19-3Q7Z4W3 81 aa1.09□□□□□ -2.23
SS18-223ENST00000583595 AHNAK2Q8IVF2 5795 aa1.08□□□□□ -2.24
SS18-223ENST00000583595 SYNE1Q8NF91 8797 aaKnown RBP1.06□□□□□ -2.24
SS18-223ENST00000583595 MT1MQ8N339 61 aa1.06□□□□□ -2.24
SS18-223ENST00000583595 MT4P47944 62 aa1.05□□□□□ -2.24
SS18-223ENST00000583595 KRTAP6-1Q3LI64 71 aa1□□□□□ -2.25
SS18-223ENST00000583595 KRTAP5-10Q6L8G5 202 aa0.99□□□□□ -2.25
SS18-223ENST00000583595 AHNAKQ09666 5890 aaKnown RBP0.95□□□□□ -2.26
SS18-223ENST00000583595 KRTAP20-2Q3LI61 65 aa0.95□□□□□ -2.26
SS18-223ENST00000583595 MUC5BQ9HC84 5762 aaPredicted RBP0.91□□□□□ -2.26
SS18-223ENST00000583595 MUC5ACP98088 5654 aa0.9□□□□□ -2.26
SS18-223ENST00000583595 KRTAP21-1Q3LI58 79 aa0.86□□□□□ -2.27
SS18-223ENST00000583595 MUC16Q8WXI7 14507 aa0.82□□□□□ -2.28
SS18-223ENST00000583595 PHGR1C9JFL3 82 aa0.61□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 55.8 ms