RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 KRTAP9-9Q9BYP9 154 aa2.41□□□□□ -2.02
USP3-210ENST00000559192 KRTAP9-4Q9BYQ2 154 aa2.41□□□□□ -2.02
USP3-210ENST00000559192 FAT4Q6V0I7 4981 aa2.39□□□□□ -2.03
USP3-210ENST00000559192 SPRR2FQ96RM1 72 aa2.37□□□□□ -2.03
USP3-210ENST00000559192 LCE3DQ9BYE3 92 aa2.36□□□□□ -2.03
USP3-210ENST00000559192 LCE3EQ5T5B0 92 aa2.35□□□□□ -2.03
USP3-210ENST00000559192 MT1LQ93083 61 aa2.35□□□□□ -2.03
USP3-210ENST00000559192 UBR4Q5T4S7 5183 aa2.34□□□□□ -2.04
USP3-210ENST00000559192 RNF213Q63HN8 5207 aa2.33□□□□□ -2.04
USP3-210ENST00000559192 MT1EP04732 61 aa2.31□□□□□ -2.04
USP3-210ENST00000559192 KRTAP4-3Q9BYR4 195 aa2.29□□□□□ -2.04
USP3-210ENST00000559192 KRTAP9-6A8MVA2 160 aa2.29□□□□□ -2.04
USP3-210ENST00000559192 KRTAP6-3Q3LI67 103 aa2.28□□□□□ -2.04
USP3-210ENST00000559192 PRM1P04553 51 aa2.27□□□□□ -2.05
USP3-210ENST00000559192 KRTAP2-3P0C7H8 128 aa2.27□□□□□ -2.05
USP3-210ENST00000559192 KRTAP2-4Q9BYR9 128 aa2.27□□□□□ -2.05
USP3-210ENST00000559192 KRTAP2-1Q9BYU5 128 aa2.27□□□□□ -2.05
USP3-210ENST00000559192 KRTAP19-7Q3SYF9 63 aa2.26□□□□□ -2.05
USP3-210ENST00000559192 KRTAP19-3Q7Z4W3 81 aa2.22□□□□□ -2.05
USP3-210ENST00000559192 KMT2DO14686 5537 aa2.21□□□□□ -2.06
USP3-210ENST00000559192 MT1MQ8N339 61 aa2.2□□□□□ -2.06
USP3-210ENST00000559192 KRTAP4-2Q9BYR5 136 aa2.2□□□□□ -2.06
USP3-210ENST00000559192 KRTAP4-9Q9BYQ8 210 aa2.18□□□□□ -2.06
USP3-210ENST00000559192 SPRR2EP22531 72 aa2.15□□□□□ -2.06
USP3-210ENST00000559192 SPRR2BP35325 72 aa2.15□□□□□ -2.06
USP3-210ENST00000559192 SPRR2AP35326 72 aa2.15□□□□□ -2.06
USP3-210ENST00000559192 GPR98Q8WXG9 6306 aa2.14□□□□□ -2.07
USP3-210ENST00000559192 SYNE1Q8NF91 8797 aaKnown RBP2.13□□□□□ -2.07
USP3-210ENST00000559192 KRTAP2-2Q9BYT5 123 aa2.13□□□□□ -2.07
USP3-210ENST00000559192 KRTAP19-6Q3LI70 58 aa2.1□□□□□ -2.07
USP3-210ENST00000559192 FSIP2Q5CZC0 6907 aa2.1□□□□□ -2.07
USP3-210ENST00000559192 USH2AO75445 5202 aa2.09□□□□□ -2.07
USP3-210ENST00000559192 NEBP20929 6669 aa2.09□□□□□ -2.08
USP3-210ENST00000559192 SPRR2DP22532 72 aa2.08□□□□□ -2.08
USP3-210ENST00000559192 SYNE2Q8WXH0 6885 aaKnown RBP2.04□□□□□ -2.08
USP3-210ENST00000559192 KRTAP6-1Q3LI64 71 aa2.02□□□□□ -2.09
USP3-210ENST00000559192 LCE1BQ5T7P3 118 aa2□□□□□ -2.09
USP3-210ENST00000559192 MT1AP04731 61 aa2□□□□□ -2.09
USP3-210ENST00000559192 SSPOA2VEC9 5147 aa1.99□□□□□ -2.09
USP3-210ENST00000559192 LCE1DQ5T752 114 aa1.96□□□□□ -2.1
USP3-210ENST00000559192 KRTAP6-2Q3LI66 62 aa1.96□□□□□ -2.1
USP3-210ENST00000559192 LCE5AQ5TCM9 118 aa1.95□□□□□ -2.1
USP3-210ENST00000559192 FCGBPQ9Y6R7 5405 aaPredicted RBP1.93□□□□□ -2.1
USP3-210ENST00000559192 OBSCNQ5VST9 7968 aa1.9□□□□□ -2.1
USP3-210ENST00000559192 MT4P47944 62 aa1.88□□□□□ -2.11
USP3-210ENST00000559192 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.88□□□□□ -2.11
USP3-210ENST00000559192 DSTQ03001 7570 aaKnown RBP1.87□□□□□ -2.11
USP3-210ENST00000559192 KRTAP4-11Q9BYQ6 195 aa1.87□□□□□ -2.11
USP3-210ENST00000559192 MUC12Q9UKN1 5478 aa1.86□□□□□ -2.11
USP3-210ENST00000559192 LCE4AQ5TA78 99 aa1.84□□□□□ -2.12
USP3-210ENST00000559192 LCE1AQ5T7P2 110 aa1.83□□□□□ -2.12
USP3-210ENST00000559192 KRTAP5-9P26371 169 aa1.78□□□□□ -2.12
USP3-210ENST00000559192 KRTAP5-3Q6L8H2 238 aa1.78□□□□□ -2.12
USP3-210ENST00000559192 KRTAP5-5Q701N2 237 aaPredicted RBP1.78□□□□□ -2.12
USP3-210ENST00000559192 MACF1Q9UPN3 7388 aaKnown RBP1.77□□□□□ -2.13
USP3-210ENST00000559192 KRTAP5-7Q6L8G8 165 aa1.71□□□□□ -2.14
USP3-210ENST00000559192 LCE1CQ5T751 118 aa1.69□□□□□ -2.14
USP3-210ENST00000559192 LCE1EQ5T753 118 aa1.69□□□□□ -2.14
USP3-210ENST00000559192 LCE1FQ5T754 118 aa1.69□□□□□ -2.14
USP3-210ENST00000559192 AHNAKQ09666 5890 aaKnown RBP1.69□□□□□ -2.14
USP3-210ENST00000559192 HMCN1Q96RW7 5635 aa1.68□□□□□ -2.14
USP3-210ENST00000559192 MUC19Q7Z5P9 8384 aa1.68□□□□□ -2.14
USP3-210ENST00000559192 KRTAP5-2Q701N4 177 aa1.65□□□□□ -2.14
USP3-210ENST00000559192 AHNAK2Q8IVF2 5795 aa1.6□□□□□ -2.15
USP3-210ENST00000559192 MDN1Q9NU22 5596 aa1.6□□□□□ -2.15
USP3-210ENST00000559192 KRTAP5-10Q6L8G5 202 aa1.59□□□□□ -2.15
USP3-210ENST00000559192 MUC5BQ9HC84 5762 aaPredicted RBP1.58□□□□□ -2.16
USP3-210ENST00000559192 KRTAP5-11Q6L8G4 156 aa1.53□□□□□ -2.16
USP3-210ENST00000559192 KRTAP20-2Q3LI61 65 aa1.51□□□□□ -2.17
USP3-210ENST00000559192 KRTAP5-4Q6L8H1 288 aa1.45□□□□□ -2.18
USP3-210ENST00000559192 KRTAP4-4Q9BYR3 166 aa1.42□□□□□ -2.18
USP3-210ENST00000559192 KRTAP5-1Q6L8H4 278 aa1.37□□□□□ -2.19
USP3-210ENST00000559192 MUC5ACP98088 5654 aa1.36□□□□□ -2.19
USP3-210ENST00000559192 KRTAP5-8O75690 187 aa1.29□□□□□ -2.2
USP3-210ENST00000559192 PHGR1C9JFL3 82 aa1.19□□□□□ -2.22
USP3-210ENST00000559192 KRTAP21-2Q3LI59 83 aa1.13□□□□□ -2.23
USP3-210ENST00000559192 KRTAP21-1Q3LI58 79 aa1.09□□□□□ -2.23
USP3-210ENST00000559192 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 11.2 ms