RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 KMT2CQ8NEZ4 4911 aaKnown RBP4.13□□□□□ -1.75
SPG11-210ENST00000558319 HERC2O95714 4834 aa4.12□□□□□ -1.75
SPG11-210ENST00000558319 RYR2Q92736 4967 aa4.12□□□□□ -1.75
SPG11-210ENST00000558319 FSIP2Q5CZC0 6907 aa4.07□□□□□ -1.76
SPG11-210ENST00000558319 KRTAP19-2Q3LHN2 52 aa4.05□□□□□ -1.76
SPG11-210ENST00000558319 MUC17Q685J3 4493 aa4.05□□□□□ -1.76
SPG11-210ENST00000558319 KRTAP9-6A0A140TA67 174 aa4.03□□□□□ -1.76
SPG11-210ENST00000558319 HERC1Q15751 4861 aa4.01□□□□□ -1.77
SPG11-210ENST00000558319 PCLOQ9Y6V0 5065 aa4□□□□□ -1.77
SPG11-210ENST00000558319 KRTAP20-1Q3LI63 56 aa3.96□□□□□ -1.77
SPG11-210ENST00000558319 LCE1CQ5T751 118 aa3.94□□□□□ -1.78
SPG11-210ENST00000558319 LCE1EQ5T753 118 aa3.94□□□□□ -1.78
SPG11-210ENST00000558319 LCE1FQ5T754 118 aa3.94□□□□□ -1.78
SPG11-210ENST00000558319 LCE1AQ5T7P2 110 aa3.94□□□□□ -1.78
SPG11-210ENST00000558319 BIRC6Q9NR09 4857 aa3.92□□□□□ -1.78
SPG11-210ENST00000558319 KRTAP2-3P0C7H8 128 aa3.91□□□□□ -1.78
SPG11-210ENST00000558319 KRTAP2-4Q9BYR9 128 aa3.91□□□□□ -1.78
SPG11-210ENST00000558319 KRTAP2-1Q9BYU5 128 aa3.91□□□□□ -1.78
SPG11-210ENST00000558319 KRTAP6-2Q3LI66 62 aa3.87□□□□□ -1.79
SPG11-210ENST00000558319 KRTAP9-7A8MTY7 169 aa3.85□□□□□ -1.79
SPG11-210ENST00000558319 MT1AP04731 61 aa3.84□□□□□ -1.8
SPG11-210ENST00000558319 KRTAP19-7Q3SYF9 63 aa3.83□□□□□ -1.8
SPG11-210ENST00000558319 KRTAP6-1Q3LI64 71 aa3.81□□□□□ -1.8
SPG11-210ENST00000558319 ABCA13Q86UQ4 5058 aa3.8□□□□□ -1.8
SPG11-210ENST00000558319 HMCN2Q8NDA2 5059 aa3.8□□□□□ -1.8
SPG11-210ENST00000558319 RNF213Q63HN8 5207 aa3.78□□□□□ -1.8
SPG11-210ENST00000558319 EPPK1P58107 5090 aaKnown RBP3.76□□□□□ -1.81
SPG11-210ENST00000558319 UBR4Q5T4S7 5183 aa3.73□□□□□ -1.81
SPG11-210ENST00000558319 MUC2Q02817 5179 aa3.69□□□□□ -1.82
SPG11-210ENST00000558319 KRTAP9-6A8MVA2 160 aa3.69□□□□□ -1.82
SPG11-210ENST00000558319 LCE2AQ5TA79 106 aaPredicted RBP3.68□□□□□ -1.82
SPG11-210ENST00000558319 SYNE1Q8NF91 8797 aaKnown RBP3.66□□□□□ -1.82
SPG11-210ENST00000558319 FAT4Q6V0I7 4981 aa3.65□□□□□ -1.83
SPG11-210ENST00000558319 KRTAP9-4Q9BYQ2 154 aa3.62□□□□□ -1.83
SPG11-210ENST00000558319 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.62□□□□□ -1.83
SPG11-210ENST00000558319 LCE4AQ5TA78 99 aa3.56□□□□□ -1.84
SPG11-210ENST00000558319 KRTAP6-3Q3LI67 103 aa3.52□□□□□ -1.85
SPG11-210ENST00000558319 KRTAP2-2Q9BYT5 123 aa3.48□□□□□ -1.85
SPG11-210ENST00000558319 OBSCNQ5VST9 7968 aa3.45□□□□□ -1.86
SPG11-210ENST00000558319 KMT2DO14686 5537 aa3.41□□□□□ -1.86
SPG11-210ENST00000558319 KRTAP4-11Q9BYQ6 195 aa3.37□□□□□ -1.87
SPG11-210ENST00000558319 KRTAP9-9Q9BYP9 154 aa3.33□□□□□ -1.88
SPG11-210ENST00000558319 KRTAP4-4Q9BYR3 166 aa3.31□□□□□ -1.88
SPG11-210ENST00000558319 KRTAP4-6Q9BYQ5 205 aa3.29□□□□□ -1.88
SPG11-210ENST00000558319 KRTAP20-2Q3LI61 65 aa3.28□□□□□ -1.88
SPG11-210ENST00000558319 DSTQ03001 7570 aaKnown RBP3.25□□□□□ -1.89
SPG11-210ENST00000558319 KRTAP4-12Q9BQ66 201 aa3.25□□□□□ -1.89
SPG11-210ENST00000558319 KRTAP4-2Q9BYR5 136 aa3.25□□□□□ -1.89
SPG11-210ENST00000558319 FCGBPQ9Y6R7 5405 aaPredicted RBP3.24□□□□□ -1.89
SPG11-210ENST00000558319 USH2AO75445 5202 aa3.16□□□□□ -1.9
SPG11-210ENST00000558319 MACF1Q9UPN3 7388 aaKnown RBP3.07□□□□□ -1.92
SPG11-210ENST00000558319 SSPOA2VEC9 5147 aa3.04□□□□□ -1.92
SPG11-210ENST00000558319 NEBP20929 6669 aa2.89□□□□□ -1.95
SPG11-210ENST00000558319 MUC19Q7Z5P9 8384 aa2.81□□□□□ -1.96
SPG11-210ENST00000558319 KRTAP5-5Q701N2 237 aaPredicted RBP2.8□□□□□ -1.96
SPG11-210ENST00000558319 MUC12Q9UKN1 5478 aa2.79□□□□□ -1.96
SPG11-210ENST00000558319 MDN1Q9NU22 5596 aa2.74□□□□□ -1.97
SPG11-210ENST00000558319 KRTAP5-9P26371 169 aa2.74□□□□□ -1.97
SPG11-210ENST00000558319 KRTAP5-4Q6L8H1 288 aa2.59□□□□□ -1.99
SPG11-210ENST00000558319 KRTAP5-3Q6L8H2 238 aa2.35□□□□□ -2.03
SPG11-210ENST00000558319 PHGR1C9JFL3 82 aa2.31□□□□□ -2.04
SPG11-210ENST00000558319 MUC5ACP98088 5654 aa2.29□□□□□ -2.04
SPG11-210ENST00000558319 KRTAP5-8O75690 187 aa2.27□□□□□ -2.05
SPG11-210ENST00000558319 HMCN1Q96RW7 5635 aa2.15□□□□□ -2.07
SPG11-210ENST00000558319 KRTAP5-2Q701N4 177 aa2.15□□□□□ -2.07
SPG11-210ENST00000558319 KRTAP5-10Q6L8G5 202 aa2.12□□□□□ -2.07
SPG11-210ENST00000558319 GPR98Q8WXG9 6306 aa2.08□□□□□ -2.08
SPG11-210ENST00000558319 AHNAK2Q8IVF2 5795 aa2.02□□□□□ -2.09
SPG11-210ENST00000558319 KRTAP5-1Q6L8H4 278 aa1.92□□□□□ -2.1
SPG11-210ENST00000558319 MUC5BQ9HC84 5762 aaPredicted RBP1.78□□□□□ -2.12
SPG11-210ENST00000558319 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
SPG11-210ENST00000558319 KRTAP21-2Q3LI59 83 aa1.7□□□□□ -2.14
SPG11-210ENST00000558319 KRTAP5-11Q6L8G4 156 aa1.67□□□□□ -2.14
SPG11-210ENST00000558319 AHNAKQ09666 5890 aaKnown RBP1.57□□□□□ -2.16
SPG11-210ENST00000558319 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.51□□□□□ -2.17
SPG11-210ENST00000558319 KRTAP5-7Q6L8G8 165 aa1.4□□□□□ -2.19
SPG11-210ENST00000558319 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 6.1 ms