RNA–Protein interactions for RNA: ENST00000557352.1

VRK1-207, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-207ENST00000557352 LCA10Q71F78 164 aa1.25□□□□□ -2.21
VRK1-207ENST00000557352 Q5VV11 94 aa1.24□□□□□ -2.21
VRK1-207ENST00000557352 CSAG1Q6PB30 78 aa1.24□□□□□ -2.21
VRK1-207ENST00000557352 A0A1B0GU69 56 aa1.23□□□□□ -2.21
VRK1-207ENST00000557352 MUC2Q02817 5179 aa1.22□□□□□ -2.21
VRK1-207ENST00000557352 UQCR11O14957 56 aa1.22□□□□□ -2.21
VRK1-207ENST00000557352 RNF213Q63HN8 5207 aa1.21□□□□□ -2.22
VRK1-207ENST00000557352 M0QZ58 72 aa1.21□□□□□ -2.22
VRK1-207ENST00000557352 CDC42SE1Q9NRR8 79 aa1.21□□□□□ -2.22
VRK1-207ENST00000557352 CRIPTQ9P021 101 aa1.21□□□□□ -2.22
VRK1-207ENST00000557352 UBR4Q5T4S7 5183 aa1.21□□□□□ -2.22
VRK1-207ENST00000557352 MT1HP80294 61 aa1.2□□□□□ -2.22
VRK1-207ENST00000557352 SPATA8Q6RVD6 105 aa1.2□□□□□ -2.22
VRK1-207ENST00000557352 A6NN06 94 aa1.19□□□□□ -2.22
VRK1-207ENST00000557352 MIR22HGQ0VDD5 57 aa1.18□□□□□ -2.22
VRK1-207ENST00000557352 FAT4Q6V0I7 4981 aa1.17□□□□□ -2.22
VRK1-207ENST00000557352 BRK1Q8WUW1 75 aa1.17□□□□□ -2.22
VRK1-207ENST00000557352 SPRR2GQ9BYE4 73 aa1.17□□□□□ -2.22
VRK1-207ENST00000557352 M0R2T5 61 aa1.15□□□□□ -2.23
VRK1-207ENST00000557352 MT2AP02795 61 aa1.15□□□□□ -2.23
VRK1-207ENST00000557352 MT1FP04733 61 aa1.14□□□□□ -2.23
VRK1-207ENST00000557352 KRTAP19-8Q3LI54 63 aa1.14□□□□□ -2.23
VRK1-207ENST00000557352 PMAIP1Q13794 54 aa1.12□□□□□ -2.23
VRK1-207ENST00000557352 A0A0D9SG42 100 aa1.1□□□□□ -2.23
VRK1-207ENST00000557352 KRTAP5-10Q6L8G5 202 aa1.1□□□□□ -2.23
VRK1-207ENST00000557352 KTN1-AS1Q86SY8 53 aa1.1□□□□□ -2.23
VRK1-207ENST00000557352 MT1BP07438 61 aa1.09□□□□□ -2.23
VRK1-207ENST00000557352 ROMO1P60602 79 aa1.09□□□□□ -2.23
VRK1-207ENST00000557352 LINC01554Q52M75 96 aa1.09□□□□□ -2.23
VRK1-207ENST00000557352 PLAC4Q8WY50 150 aa1.09□□□□□ -2.23
VRK1-207ENST00000557352 PRO2289Q9P1D8 64 aa1.08□□□□□ -2.24
VRK1-207ENST00000557352 C10orf95Q9H7T3 257 aa1.07□□□□□ -2.24
VRK1-207ENST00000557352 MT1XP80297 61 aa1.06□□□□□ -2.24
VRK1-207ENST00000557352 TNP1P09430 55 aa1.05□□□□□ -2.24
VRK1-207ENST00000557352 KRTAP19-6Q3LI70 58 aa1.05□□□□□ -2.24
VRK1-207ENST00000557352 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
VRK1-207ENST00000557352 SSPOA2VEC9 5147 aa1.03□□□□□ -2.24
VRK1-207ENST00000557352 AHNAK2Q8IVF2 5795 aa1.03□□□□□ -2.24
VRK1-207ENST00000557352 USH2AO75445 5202 aa1.02□□□□□ -2.25
VRK1-207ENST00000557352 KRTAP8-1Q8IUC2 63 aa1.01□□□□□ -2.25
VRK1-207ENST00000557352 FSIP2Q5CZC0 6907 aa0.97□□□□□ -2.25
VRK1-207ENST00000557352 KRTAP19-7Q3SYF9 63 aa0.95□□□□□ -2.26
VRK1-207ENST00000557352 MT1EP04732 61 aa0.93□□□□□ -2.26
VRK1-207ENST00000557352 KRTAP19-5Q3LI72 72 aa0.93□□□□□ -2.26
VRK1-207ENST00000557352 KMT2DO14686 5537 aa0.93□□□□□ -2.26
VRK1-207ENST00000557352 MACF1Q9UPN3 7388 aaKnown RBP0.92□□□□□ -2.26
VRK1-207ENST00000557352 MT1LQ93083 61 aa0.91□□□□□ -2.26
VRK1-207ENST00000557352 MT1GP13640 62 aa0.9□□□□□ -2.27
VRK1-207ENST00000557352 KRTAP19-3Q7Z4W3 81 aa0.9□□□□□ -2.27
VRK1-207ENST00000557352 SPRR2FQ96RM1 72 aa0.88□□□□□ -2.27
VRK1-207ENST00000557352 MUC12Q9UKN1 5478 aa0.87□□□□□ -2.27
VRK1-207ENST00000557352 MT1MQ8N339 61 aa0.87□□□□□ -2.27
VRK1-207ENST00000557352 SYNE2Q8WXH0 6885 aaKnown RBP0.87□□□□□ -2.27
VRK1-207ENST00000557352 NEBP20929 6669 aa0.84□□□□□ -2.27
VRK1-207ENST00000557352 MDN1Q9NU22 5596 aa0.84□□□□□ -2.27
VRK1-207ENST00000557352 SPRR2EP22531 72 aa0.84□□□□□ -2.27
VRK1-207ENST00000557352 SPRR2BP35325 72 aa0.84□□□□□ -2.27
VRK1-207ENST00000557352 SPRR2AP35326 72 aa0.84□□□□□ -2.27
VRK1-207ENST00000557352 DSTQ03001 7570 aaKnown RBP0.81□□□□□ -2.28
VRK1-207ENST00000557352 KRTAP2-3P0C7H8 128 aa0.81□□□□□ -2.28
VRK1-207ENST00000557352 SPRR2DP22532 72 aa0.81□□□□□ -2.28
VRK1-207ENST00000557352 KRTAP2-4Q9BYR9 128 aa0.81□□□□□ -2.28
VRK1-207ENST00000557352 KRTAP2-1Q9BYU5 128 aa0.81□□□□□ -2.28
VRK1-207ENST00000557352 KRTAP20-1Q3LI63 56 aa0.8□□□□□ -2.28
VRK1-207ENST00000557352 MT1AP04731 61 aa0.79□□□□□ -2.28
VRK1-207ENST00000557352 GPR98Q8WXG9 6306 aa0.76□□□□□ -2.29
VRK1-207ENST00000557352 KRTAP6-1Q3LI64 71 aa0.75□□□□□ -2.29
VRK1-207ENST00000557352 INE1O15225 51 aa0.73□□□□□ -2.29
VRK1-207ENST00000557352 SYNE1Q8NF91 8797 aaKnown RBP0.73□□□□□ -2.29
VRK1-207ENST00000557352 KRTAP20-2Q3LI61 65 aa0.71□□□□□ -2.3
VRK1-207ENST00000557352 KRTAP6-2Q3LI66 62 aa0.69□□□□□ -2.3
VRK1-207ENST00000557352 MT4P47944 62 aa0.67□□□□□ -2.3
VRK1-207ENST00000557352 AHNAKQ09666 5890 aaKnown RBP0.62□□□□□ -2.31
VRK1-207ENST00000557352 MUC5ACP98088 5654 aa0.56□□□□□ -2.32
VRK1-207ENST00000557352 MUC5BQ9HC84 5762 aaPredicted RBP0.55□□□□□ -2.32
VRK1-207ENST00000557352 PRM1P04553 51 aa0.54□□□□□ -2.32
VRK1-207ENST00000557352 PHGR1C9JFL3 82 aa0.45□□□□□ -2.34
VRK1-207ENST00000557352 KRTAP21-1Q3LI58 79 aa0.38□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 108.7 ms