RNA–Protein interactions for RNA: ENST00000557352.1

VRK1-207, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-207ENST00000557352 AEBP2Q6ZN18 517 aaPredicted RBP29■■■□□ 2.23
VRK1-207ENST00000557352 CHIC1Q5VXU3 224 aa27.69■■■□□ 2.02
VRK1-207ENST00000557352 SENP3Q9H4L4 574 aaPredicted RBP24.63■■□□□ 1.53
VRK1-207ENST00000557352 PHF23Q9BUL5 403 aaPredicted RBP24.38■■□□□ 1.49
VRK1-207ENST00000557352 FOXD1Q16676 465 aa22.99■■□□□ 1.27
VRK1-207ENST00000557352 PLPPR3Q6T4P5 718 aa22.18■■□□□ 1.14
VRK1-207ENST00000557352 PPP6R1Q9UPN7 881 aa21.67■■□□□ 1.06
VRK1-207ENST00000557352 ADRA2BP18089 450 aa21.59■■□□□ 1.05
VRK1-207ENST00000557352 PIAS4Q8N2W9 510 aaPredicted RBP21.48■■□□□ 1.03
VRK1-207ENST00000557352 MSH5O43196 834 aa21.38■■□□□ 1.01
VRK1-207ENST00000557352 POTEDQ86YR6 584 aa20.59■□□□□ 0.89
VRK1-207ENST00000557352 MAPK8IP2Q13387 824 aaPredicted RBP19.79■□□□□ 0.76
VRK1-207ENST00000557352 SCAF1Q9H7N4 1312 aaKnown RBP19.69■□□□□ 0.74
VRK1-207ENST00000557352 DMRT2Q9Y5R5 561 aa19.59■□□□□ 0.73
VRK1-207ENST00000557352 PPP4R3CPQ6ZMV5 832 aa19.49■□□□□ 0.71
VRK1-207ENST00000557352 CNKSR2Q8WXI2 1034 aa19.07■□□□□ 0.64
VRK1-207ENST00000557352 HOXD11P31277 338 aaPredicted RBP18.96■□□□□ 0.63
VRK1-207ENST00000557352 RNF216Q9NWF9 866 aaPredicted RBP18.85■□□□□ 0.61
VRK1-207ENST00000557352 NCBP3Q53F19 620 aaKnown RBP18.75■□□□□ 0.59
VRK1-207ENST00000557352 DCAF8L1A6NGE4 600 aa18.72■□□□□ 0.59
VRK1-207ENST00000557352 NPM3O75607 178 aaKnown RBP18.54■□□□□ 0.56
VRK1-207ENST00000557352 KCNA4P22459 653 aa18.36■□□□□ 0.53
VRK1-207ENST00000557352 RNF39Q9H2S5 420 aa18.31■□□□□ 0.52
VRK1-207ENST00000557352 DNAJC5BQ9UF47 199 aa18.26■□□□□ 0.51
VRK1-207ENST00000557352 CACNB1Q02641 598 aaPredicted RBP18.23■□□□□ 0.51
VRK1-207ENST00000557352 C1QBPQ07021 282 aaKnown RBP18.02■□□□□ 0.48
VRK1-207ENST00000557352 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.02■□□□□ 0.48
VRK1-207ENST00000557352 U3KPZ7 1027 aaPredicted RBP17.71■□□□□ 0.43
VRK1-207ENST00000557352 SLC4A2P04920 1241 aa17.69■□□□□ 0.42
VRK1-207ENST00000557352 SPINK5Q9NQ38 1064 aaPredicted RBP17.4■□□□□ 0.38
VRK1-207ENST00000557352 SLC4A1APQ9BWU0 796 aaKnown RBP17.39■□□□□ 0.37
VRK1-207ENST00000557352 CAPN15O75808 1086 aa17.31■□□□□ 0.36
VRK1-207ENST00000557352 DSG3P32926 999 aa17.21■□□□□ 0.35
VRK1-207ENST00000557352 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.2■□□□□ 0.34
VRK1-207ENST00000557352 HNRNPUL2Q1KMD3 747 aaKnown RBP17.2■□□□□ 0.34
VRK1-207ENST00000557352 APLP2Q06481 763 aa17.15■□□□□ 0.34
VRK1-207ENST00000557352 SAMD1Q6SPF0 538 aaPredicted RBP17.13■□□□□ 0.33
VRK1-207ENST00000557352 MYCNP04198 464 aaPredicted RBP17.1■□□□□ 0.33
VRK1-207ENST00000557352 TRHP20396 242 aaPredicted RBP17.08■□□□□ 0.32
VRK1-207ENST00000557352 FOXD4L1Q9NU39 408 aa17.05■□□□□ 0.32
VRK1-207ENST00000557352 ZNF219Q9P2Y4 722 aaPredicted RBP17.05■□□□□ 0.32
VRK1-207ENST00000557352 ABCB7O75027 752 aa16.95■□□□□ 0.3
VRK1-207ENST00000557352 ZBTB22O15209 634 aa16.93■□□□□ 0.3
VRK1-207ENST00000557352 ATF5Q9Y2D1 282 aaPredicted RBP16.77■□□□□ 0.28
VRK1-207ENST00000557352 POLA2Q14181 598 aa16.69■□□□□ 0.26
VRK1-207ENST00000557352 ATXN8OSP0DMR3 200 aa16.51■□□□□ 0.23
VRK1-207ENST00000557352 CSRNP3Q8WYN3 585 aa16.45■□□□□ 0.22
VRK1-207ENST00000557352 EHMT2Q96KQ7 1210 aa16.42■□□□□ 0.22
VRK1-207ENST00000557352 RBM42Q9BTD8 480 aaKnown RBP16.35■□□□□ 0.21
VRK1-207ENST00000557352 ZBTB12Q9Y330 459 aaPredicted RBP16.32■□□□□ 0.2
VRK1-207ENST00000557352 POTEHQ6S545 545 aa16.15■□□□□ 0.18
VRK1-207ENST00000557352 OSCARQ8IYS5 282 aa16.15■□□□□ 0.18
VRK1-207ENST00000557352 AKT1S1Q96B36 256 aa16.05■□□□□ 0.16
VRK1-207ENST00000557352 FBLN2P98095 1184 aa16■□□□□ 0.15
VRK1-207ENST00000557352 MKRN4PQ13434 485 aaPredicted RBP16■□□□□ 0.15
VRK1-207ENST00000557352 CHRDL2Q6WN34 429 aa15.96■□□□□ 0.15
VRK1-207ENST00000557352 REM2Q8IYK8 340 aaPredicted RBP15.92■□□□□ 0.14
VRK1-207ENST00000557352 SPDYE2BA6NHP3 402 aa15.86■□□□□ 0.13
VRK1-207ENST00000557352 SPDYE6P0CI01 402 aa15.86■□□□□ 0.13
VRK1-207ENST00000557352 SPDYE2Q495Y8 402 aa15.86■□□□□ 0.13
VRK1-207ENST00000557352 PITPNM1O00562 1244 aa15.75■□□□□ 0.11
VRK1-207ENST00000557352 ZNF692Q9BU19 519 aaPredicted RBP15.71■□□□□ 0.11
VRK1-207ENST00000557352 SSUH2Q9Y2M2 353 aa15.7■□□□□ 0.1
VRK1-207ENST00000557352 PIP4P2Q8N4L2 257 aa15.64■□□□□ 0.09
VRK1-207ENST00000557352 FXR2P51116 673 aaKnown RBP eCLIP15.58■□□□□ 0.08
VRK1-207ENST00000557352 SPDYE1Q8NFV5 336 aaPredicted RBP15.52■□□□□ 0.08
VRK1-207ENST00000557352 PABPN1Q86U42 306 aaKnown RBP eCLIP15.49■□□□□ 0.07
VRK1-207ENST00000557352 CLEC11AQ9Y240 323 aa15.49■□□□□ 0.07
VRK1-207ENST00000557352 PRKAR2AP13861 404 aaKnown RBP15.32■□□□□ 0.04
VRK1-207ENST00000557352 SPDYE4A6NLX3 237 aa15.29■□□□□ 0.04
VRK1-207ENST00000557352 HAX1O00165 279 aa15.26■□□□□ 0.03
VRK1-207ENST00000557352 PRR29P0C7W0 189 aa15.26■□□□□ 0.03
VRK1-207ENST00000557352 SP7Q8TDD2 431 aaPredicted RBP15.23■□□□□ 0.03
VRK1-207ENST00000557352 CHADLQ6NUI6 762 aa15.21■□□□□ 0.03
VRK1-207ENST00000557352 EVX2Q03828 476 aa15.17■□□□□ 0.02
VRK1-207ENST00000557352 C19orf67A6NJJ6 358 aa15.07■□□□□ 0
VRK1-207ENST00000557352 STAG3Q9UJ98 1225 aa15.07■□□□□ 0
VRK1-207ENST00000557352 PROM2Q8N271 834 aa15.01□□□□□ -0.01
VRK1-207ENST00000557352 FARP1Q9Y4F1 1045 aaPredicted RBP15□□□□□ -0.01
VRK1-207ENST00000557352 CREBZFQ9NS37 354 aa14.98□□□□□ -0.01
VRK1-207ENST00000557352 FKBP8Q14318 412 aa14.88□□□□□ -0.03
VRK1-207ENST00000557352 CD44P16070 742 aaKnown RBP14.85□□□□□ -0.03
VRK1-207ENST00000557352 GABBR2O75899 941 aa14.8□□□□□ -0.04
VRK1-207ENST00000557352 MNX1P50219 401 aaPredicted RBP14.77□□□□□ -0.05
VRK1-207ENST00000557352 ZRANB1Q9UGI0 708 aa14.66□□□□□ -0.06
VRK1-207ENST00000557352 NPM1P06748 294 aaKnown RBP eCLIP14.65□□□□□ -0.06
VRK1-207ENST00000557352 ZNF579Q8NAF0 562 aaKnown RBP14.64□□□□□ -0.07
VRK1-207ENST00000557352 CLCN6P51797 869 aa14.58□□□□□ -0.08
VRK1-207ENST00000557352 MIER1Q8N108 512 aa14.55□□□□□ -0.08
VRK1-207ENST00000557352 PAK3O75914 559 aaPredicted RBP14.53□□□□□ -0.08
VRK1-207ENST00000557352 POTEIP0CG38 1075 aa14.52□□□□□ -0.09
VRK1-207ENST00000557352 PHF12Q96QT6 1004 aa14.49□□□□□ -0.09
VRK1-207ENST00000557352 PLEKHG5O94827 1062 aa14.47□□□□□ -0.09
VRK1-207ENST00000557352 GALR2O43603 387 aaPredicted RBP14.45□□□□□ -0.1
VRK1-207ENST00000557352 PLCD3Q8N3E9 789 aa14.45□□□□□ -0.1
VRK1-207ENST00000557352 FBXO3Q9UK99 471 aa14.45□□□□□ -0.1
VRK1-207ENST00000557352 TSPYL2Q9H2G4 693 aaPredicted RBP14.41□□□□□ -0.1
VRK1-207ENST00000557352 DCBLD2Q96PD2 775 aa14.39□□□□□ -0.11
VRK1-207ENST00000557352 RASEFQ8IZ41 740 aa14.37□□□□□ -0.11
VRK1-207ENST00000557352 CCDC61Q9Y6R9 512 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 971 ms