RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 PLAC4Q8WY50 150 aa1.18□□□□□ -2.22
PRPF39-207ENST00000554439 MUC2Q02817 5179 aa1.18□□□□□ -2.22
PRPF39-207ENST00000554439 MUC5ACP98088 5654 aa1.18□□□□□ -2.22
PRPF39-207ENST00000554439 LCE1CQ5T751 118 aa1.18□□□□□ -2.22
PRPF39-207ENST00000554439 LCE1BQ5T7P3 118 aa1.18□□□□□ -2.22
PRPF39-207ENST00000554439 LCE3EQ5T5B0 92 aa1.16□□□□□ -2.22
PRPF39-207ENST00000554439 EPPK1P58107 5090 aaKnown RBP1.15□□□□□ -2.22
PRPF39-207ENST00000554439 KRTAP4-1Q9BYQ7 146 aa1.15□□□□□ -2.22
PRPF39-207ENST00000554439 PCLOQ9Y6V0 5065 aa1.13□□□□□ -2.23
PRPF39-207ENST00000554439 FLGP20930 4061 aaPredicted RBP1.13□□□□□ -2.23
PRPF39-207ENST00000554439 KRTAP19-2Q3LHN2 52 aa1.12□□□□□ -2.23
PRPF39-207ENST00000554439 PP632Q6XCG6 107 aa1.11□□□□□ -2.23
PRPF39-207ENST00000554439 FAT4Q6V0I7 4981 aa1.1□□□□□ -2.23
PRPF39-207ENST00000554439 TNP1P09430 55 aa1.08□□□□□ -2.24
PRPF39-207ENST00000554439 HERC2O95714 4834 aa1.08□□□□□ -2.24
PRPF39-207ENST00000554439 SPRR5A0A1B0GTR4 108 aa1.08□□□□□ -2.24
PRPF39-207ENST00000554439 BIRC6Q9NR09 4857 aa1.07□□□□□ -2.24
PRPF39-207ENST00000554439 HERC1Q15751 4861 aa1.06□□□□□ -2.24
PRPF39-207ENST00000554439 HMCN2Q8NDA2 5059 aa1.05□□□□□ -2.24
PRPF39-207ENST00000554439 UBR4Q5T4S7 5183 aa1.04□□□□□ -2.24
PRPF39-207ENST00000554439 RNF213Q63HN8 5207 aa1.04□□□□□ -2.24
PRPF39-207ENST00000554439 KRTAP5-7Q6L8G8 165 aa1.04□□□□□ -2.24
PRPF39-207ENST00000554439 SPRR2GQ9BYE4 73 aa1.02□□□□□ -2.25
PRPF39-207ENST00000554439 M0R2T5 61 aa1.01□□□□□ -2.25
PRPF39-207ENST00000554439 MT1FP04733 61 aa1.01□□□□□ -2.25
PRPF39-207ENST00000554439 LCE3DQ9BYE3 92 aa1.01□□□□□ -2.25
PRPF39-207ENST00000554439 KMT2DO14686 5537 aa1□□□□□ -2.25
PRPF39-207ENST00000554439 KRTAP10-10P60014 251 aa1□□□□□ -2.25
PRPF39-207ENST00000554439 PRO2289Q9P1D8 64 aa1□□□□□ -2.25
PRPF39-207ENST00000554439 MACF1Q9UPN3 7388 aaKnown RBP0.99□□□□□ -2.25
PRPF39-207ENST00000554439 MT2AP02795 61 aa0.99□□□□□ -2.25
PRPF39-207ENST00000554439 MT1HP80294 61 aa0.99□□□□□ -2.25
PRPF39-207ENST00000554439 KRTAP8-1Q8IUC2 63 aa0.99□□□□□ -2.25
PRPF39-207ENST00000554439 MT1XP80297 61 aa0.99□□□□□ -2.25
PRPF39-207ENST00000554439 KRTAP12-3P60328 96 aa0.98□□□□□ -2.25
PRPF39-207ENST00000554439 MT1BP07438 61 aa0.97□□□□□ -2.25
PRPF39-207ENST00000554439 USH2AO75445 5202 aa0.97□□□□□ -2.25
PRPF39-207ENST00000554439 INE1O15225 51 aa0.97□□□□□ -2.25
PRPF39-207ENST00000554439 KRTAP19-8Q3LI54 63 aa0.96□□□□□ -2.26
PRPF39-207ENST00000554439 KRTAP6-3Q3LI67 103 aa0.94□□□□□ -2.26
PRPF39-207ENST00000554439 KRTAP19-5Q3LI72 72 aa0.94□□□□□ -2.26
PRPF39-207ENST00000554439 KRTAP2-3P0C7H8 128 aa0.88□□□□□ -2.27
PRPF39-207ENST00000554439 KRTAP2-4Q9BYR9 128 aa0.88□□□□□ -2.27
PRPF39-207ENST00000554439 KRTAP2-1Q9BYU5 128 aa0.88□□□□□ -2.27
PRPF39-207ENST00000554439 KRTAP19-7Q3SYF9 63 aa0.87□□□□□ -2.27
PRPF39-207ENST00000554439 KRTAP20-1Q3LI63 56 aa0.86□□□□□ -2.27
PRPF39-207ENST00000554439 DSTQ03001 7570 aaKnown RBP0.86□□□□□ -2.27
PRPF39-207ENST00000554439 FSIP2Q5CZC0 6907 aa0.86□□□□□ -2.27
PRPF39-207ENST00000554439 MT1LQ93083 61 aa0.85□□□□□ -2.27
PRPF39-207ENST00000554439 SSPOA2VEC9 5147 aa0.84□□□□□ -2.27
PRPF39-207ENST00000554439 MT1EP04732 61 aa0.84□□□□□ -2.27
PRPF39-207ENST00000554439 MUC12Q9UKN1 5478 aa0.84□□□□□ -2.28
PRPF39-207ENST00000554439 FCGBPQ9Y6R7 5405 aaPredicted RBP0.84□□□□□ -2.28
PRPF39-207ENST00000554439 SYNE2Q8WXH0 6885 aaKnown RBP0.83□□□□□ -2.28
PRPF39-207ENST00000554439 MT1GP13640 62 aa0.82□□□□□ -2.28
PRPF39-207ENST00000554439 KRTAP21-2Q3LI59 83 aa0.82□□□□□ -2.28
PRPF39-207ENST00000554439 MDN1Q9NU22 5596 aa0.81□□□□□ -2.28
PRPF39-207ENST00000554439 KRTAP12-4P60329 112 aa0.81□□□□□ -2.28
PRPF39-207ENST00000554439 KRTAP5-10Q6L8G5 202 aa0.8□□□□□ -2.28
PRPF39-207ENST00000554439 MUC19Q7Z5P9 8384 aa0.78□□□□□ -2.28
PRPF39-207ENST00000554439 MT1MQ8N339 61 aa0.78□□□□□ -2.28
PRPF39-207ENST00000554439 SYNE1Q8NF91 8797 aaKnown RBP0.78□□□□□ -2.28
PRPF39-207ENST00000554439 KRTAP19-3Q7Z4W3 81 aa0.77□□□□□ -2.29
PRPF39-207ENST00000554439 KRTAP19-6Q3LI70 58 aa0.75□□□□□ -2.29
PRPF39-207ENST00000554439 KRTAP6-1Q3LI64 71 aa0.74□□□□□ -2.29
PRPF39-207ENST00000554439 PRM1P04553 51 aa0.73□□□□□ -2.29
PRPF39-207ENST00000554439 SPRR2FQ96RM1 72 aa0.73□□□□□ -2.29
PRPF39-207ENST00000554439 MT1AP04731 61 aa0.72□□□□□ -2.29
PRPF39-207ENST00000554439 KRTAP6-2Q3LI66 62 aa0.69□□□□□ -2.3
PRPF39-207ENST00000554439 SPRR2EP22531 72 aa0.66□□□□□ -2.3
PRPF39-207ENST00000554439 SPRR2BP35325 72 aa0.66□□□□□ -2.3
PRPF39-207ENST00000554439 SPRR2AP35326 72 aa0.66□□□□□ -2.3
PRPF39-207ENST00000554439 SPRR2DP22532 72 aa0.64□□□□□ -2.31
PRPF39-207ENST00000554439 MUC16Q8WXI7 14507 aa0.57□□□□□ -2.32
PRPF39-207ENST00000554439 MT4P47944 62 aa0.57□□□□□ -2.32
PRPF39-207ENST00000554439 KRTAP20-2Q3LI61 65 aa0.53□□□□□ -2.32
PRPF39-207ENST00000554439 KRTAP21-1Q3LI58 79 aa0.51□□□□□ -2.33
PRPF39-207ENST00000554439 PHGR1C9JFL3 82 aa0.37□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 7.8 ms