RNA–Protein interactions for RNA: ENST00000553612.5

GTF2A1-203, Transcript of general transcription factor IIA subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2A1, Length 6,306 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-203ENST00000553612 HERC2O95714 4834 aa2.66□□□□□ -1.98
GTF2A1-203ENST00000553612 KRTAP2-2Q9BYT5 123 aa2.65□□□□□ -1.98
GTF2A1-203ENST00000553612 KRTAP9-2Q9BYQ4 174 aa2.65□□□□□ -1.99
GTF2A1-203ENST00000553612 MT1LQ93083 61 aa2.63□□□□□ -1.99
GTF2A1-203ENST00000553612 KRTAP9-8Q9BYQ0 159 aa2.62□□□□□ -1.99
GTF2A1-203ENST00000553612 LCE2DQ5TA82 110 aaPredicted RBP2.61□□□□□ -1.99
GTF2A1-203ENST00000553612 KRTAP6-2Q3LI66 62 aa2.6□□□□□ -1.99
GTF2A1-203ENST00000553612 HMCN2Q8NDA2 5059 aa2.6□□□□□ -1.99
GTF2A1-203ENST00000553612 EPPK1P58107 5090 aaKnown RBP2.58□□□□□ -2
GTF2A1-203ENST00000553612 FCGBPQ9Y6R7 5405 aaPredicted RBP2.58□□□□□ -2
GTF2A1-203ENST00000553612 KRTAP21-3Q3LHN1 58 aa2.56□□□□□ -2
GTF2A1-203ENST00000553612 UBR4Q5T4S7 5183 aa2.56□□□□□ -2
GTF2A1-203ENST00000553612 KRTAP19-2Q3LHN2 52 aa2.56□□□□□ -2
GTF2A1-203ENST00000553612 FSIP2Q5CZC0 6907 aa2.55□□□□□ -2
GTF2A1-203ENST00000553612 FAT4Q6V0I7 4981 aa2.55□□□□□ -2
GTF2A1-203ENST00000553612 MT1EP04732 61 aa2.54□□□□□ -2
GTF2A1-203ENST00000553612 MUC19Q7Z5P9 8384 aa2.52□□□□□ -2.01
GTF2A1-203ENST00000553612 ABCA13Q86UQ4 5058 aa2.51□□□□□ -2.01
GTF2A1-203ENST00000553612 MT3P25713 68 aa2.5□□□□□ -2.01
GTF2A1-203ENST00000553612 KRTAP9-3Q9BYQ3 159 aa2.49□□□□□ -2.01
GTF2A1-203ENST00000553612 RNF213Q63HN8 5207 aa2.48□□□□□ -2.01
GTF2A1-203ENST00000553612 LCE5AQ5TCM9 118 aa2.48□□□□□ -2.01
GTF2A1-203ENST00000553612 BIRC6Q9NR09 4857 aa2.47□□□□□ -2.01
GTF2A1-203ENST00000553612 HERC1Q15751 4861 aa2.45□□□□□ -2.02
GTF2A1-203ENST00000553612 KRTAP19-4Q3LI73 84 aa2.45□□□□□ -2.02
GTF2A1-203ENST00000553612 KRTAP19-7Q3SYF9 63 aa2.45□□□□□ -2.02
GTF2A1-203ENST00000553612 MT1MQ8N339 61 aa2.44□□□□□ -2.02
GTF2A1-203ENST00000553612 KRTAP19-3Q7Z4W3 81 aa2.42□□□□□ -2.02
GTF2A1-203ENST00000553612 PCLOQ9Y6V0 5065 aa2.41□□□□□ -2.02
GTF2A1-203ENST00000553612 SPRR2EP22531 72 aa2.4□□□□□ -2.03
GTF2A1-203ENST00000553612 SPRR2BP35325 72 aa2.4□□□□□ -2.03
GTF2A1-203ENST00000553612 SPRR2AP35326 72 aa2.4□□□□□ -2.03
GTF2A1-203ENST00000553612 LCE1BQ5T7P3 118 aa2.39□□□□□ -2.03
GTF2A1-203ENST00000553612 KRTAP6-1Q3LI64 71 aa2.36□□□□□ -2.03
GTF2A1-203ENST00000553612 LCE4AQ5TA78 99 aa2.33□□□□□ -2.04
GTF2A1-203ENST00000553612 KRTAP4-11Q9BYQ6 195 aa2.33□□□□□ -2.04
GTF2A1-203ENST00000553612 MT1AP04731 61 aa2.32□□□□□ -2.04
GTF2A1-203ENST00000553612 USH2AO75445 5202 aa2.32□□□□□ -2.04
GTF2A1-203ENST00000553612 SSPOA2VEC9 5147 aa2.31□□□□□ -2.04
GTF2A1-203ENST00000553612 KRTAP5-5Q701N2 237 aaPredicted RBP2.3□□□□□ -2.04
GTF2A1-203ENST00000553612 SPRR2DP22532 72 aa2.26□□□□□ -2.05
GTF2A1-203ENST00000553612 MT4P47944 62 aa2.25□□□□□ -2.05
GTF2A1-203ENST00000553612 KRTAP9-4Q9BYQ2 154 aa2.25□□□□□ -2.05
GTF2A1-203ENST00000553612 MUC12Q9UKN1 5478 aa2.13□□□□□ -2.07
GTF2A1-203ENST00000553612 MACF1Q9UPN3 7388 aaKnown RBP1.98□□□□□ -2.09
GTF2A1-203ENST00000553612 KRTAP4-4Q9BYR3 166 aa1.98□□□□□ -2.09
GTF2A1-203ENST00000553612 LCE1CQ5T751 118 aa1.97□□□□□ -2.09
GTF2A1-203ENST00000553612 KRTAP9-9Q9BYP9 154 aa1.91□□□□□ -2.1
GTF2A1-203ENST00000553612 KRTAP19-6Q3LI70 58 aa1.88□□□□□ -2.11
GTF2A1-203ENST00000553612 KRTAP5-2Q701N4 177 aa1.77□□□□□ -2.13
GTF2A1-203ENST00000553612 MDN1Q9NU22 5596 aa1.72□□□□□ -2.13
GTF2A1-203ENST00000553612 KRTAP20-2Q3LI61 65 aa1.72□□□□□ -2.13
GTF2A1-203ENST00000553612 KRTAP4-6Q9BYQ5 205 aa1.72□□□□□ -2.13
GTF2A1-203ENST00000553612 KRTAP4-12Q9BQ66 201 aa1.71□□□□□ -2.14
GTF2A1-203ENST00000553612 KRTAP4-2Q9BYR5 136 aa1.71□□□□□ -2.14
GTF2A1-203ENST00000553612 MUC5ACP98088 5654 aa1.56□□□□□ -2.16
GTF2A1-203ENST00000553612 KRTAP5-10Q6L8G5 202 aa1.52□□□□□ -2.17
GTF2A1-203ENST00000553612 KRTAP21-1Q3LI58 79 aa1.49□□□□□ -2.17
GTF2A1-203ENST00000553612 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.43□□□□□ -2.18
GTF2A1-203ENST00000553612 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.43□□□□□ -2.18
GTF2A1-203ENST00000553612 KRTAP5-8O75690 187 aa1.42□□□□□ -2.18
GTF2A1-203ENST00000553612 HMCN1Q96RW7 5635 aa1.4□□□□□ -2.19
GTF2A1-203ENST00000553612 KRTAP5-4Q6L8H1 288 aa1.39□□□□□ -2.19
GTF2A1-203ENST00000553612 KRTAP5-3Q6L8H2 238 aa1.38□□□□□ -2.19
GTF2A1-203ENST00000553612 NEBP20929 6669 aa1.32□□□□□ -2.2
GTF2A1-203ENST00000553612 KRTAP5-1Q6L8H4 278 aa1.26□□□□□ -2.21
GTF2A1-203ENST00000553612 KRTAP20-1Q3LI63 56 aa1.24□□□□□ -2.21
GTF2A1-203ENST00000553612 KRTAP5-9P26371 169 aa1.2□□□□□ -2.22
GTF2A1-203ENST00000553612 KRTAP21-2Q3LI59 83 aa1.14□□□□□ -2.23
GTF2A1-203ENST00000553612 GPR98Q8WXG9 6306 aa1.1□□□□□ -2.23
GTF2A1-203ENST00000553612 MUC5BQ9HC84 5762 aaPredicted RBP1.08□□□□□ -2.24
GTF2A1-203ENST00000553612 MUC16Q8WXI7 14507 aa0.93□□□□□ -2.26
GTF2A1-203ENST00000553612 KRTAP5-7Q6L8G8 165 aa0.91□□□□□ -2.26
GTF2A1-203ENST00000553612 KRTAP5-11Q6L8G4 156 aa0.89□□□□□ -2.27
GTF2A1-203ENST00000553612 AHNAKQ09666 5890 aaKnown RBP0.87□□□□□ -2.27
GTF2A1-203ENST00000553612 AHNAK2Q8IVF2 5795 aa0.82□□□□□ -2.28
GTF2A1-203ENST00000553612 PHGR1C9JFL3 82 aa0.81□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 59.8 ms