RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 KRTAP9-6A0A140TA67 174 aa4.55□□□□□ -1.68
USP3-204ENST00000540797 LCE3DQ9BYE3 92 aa4.54□□□□□ -1.68
USP3-204ENST00000540797 RNF213Q63HN8 5207 aa4.54□□□□□ -1.68
USP3-204ENST00000540797 MT1MQ8N339 61 aa4.53□□□□□ -1.68
USP3-204ENST00000540797 FSIP2Q5CZC0 6907 aa4.47□□□□□ -1.69
USP3-204ENST00000540797 MT4P47944 62 aa4.46□□□□□ -1.7
USP3-204ENST00000540797 LCE3EQ5T5B0 92 aa4.45□□□□□ -1.7
USP3-204ENST00000540797 KRTAP4-3Q9BYR4 195 aa4.38□□□□□ -1.71
USP3-204ENST00000540797 MT3P25713 68 aa4.36□□□□□ -1.71
USP3-204ENST00000540797 LOC100996750A0A140TA64 210 aa4.36□□□□□ -1.71
USP3-204ENST00000540797 HMCN2Q8NDA2 5059 aa4.36□□□□□ -1.71
USP3-204ENST00000540797 KRTAP19-7Q3SYF9 63 aa4.33□□□□□ -1.72
USP3-204ENST00000540797 KRTAP9-7A8MTY7 169 aa4.27□□□□□ -1.73
USP3-204ENST00000540797 MUC2Q02817 5179 aa4.24□□□□□ -1.73
USP3-204ENST00000540797 KRTAP20-1Q3LI63 56 aa4.23□□□□□ -1.73
USP3-204ENST00000540797 KRTAP6-3Q3LI67 103 aa4.22□□□□□ -1.73
USP3-204ENST00000540797 SYNE1Q8NF91 8797 aaKnown RBP4.21□□□□□ -1.74
USP3-204ENST00000540797 MT1AP04731 61 aa4.18□□□□□ -1.74
USP3-204ENST00000540797 LCE1AQ5T7P2 110 aa4.15□□□□□ -1.74
USP3-204ENST00000540797 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.15□□□□□ -1.75
USP3-204ENST00000540797 LCE1DQ5T752 114 aa4.15□□□□□ -1.75
USP3-204ENST00000540797 SYNE2Q8WXH0 6885 aaKnown RBP4.14□□□□□ -1.75
USP3-204ENST00000540797 LCE1BQ5T7P3 118 aa4.14□□□□□ -1.75
USP3-204ENST00000540797 KRTAP2-3P0C7H8 128 aa4.08□□□□□ -1.76
USP3-204ENST00000540797 KRTAP2-4Q9BYR9 128 aa4.08□□□□□ -1.76
USP3-204ENST00000540797 KRTAP2-1Q9BYU5 128 aa4.03□□□□□ -1.76
USP3-204ENST00000540797 PRM1P04553 51 aa4.01□□□□□ -1.77
USP3-204ENST00000540797 LCE5AQ5TCM9 118 aa4□□□□□ -1.77
USP3-204ENST00000540797 KRTAP4-9Q9BYQ8 210 aa3.97□□□□□ -1.77
USP3-204ENST00000540797 KRTAP2-2Q9BYT5 123 aa3.95□□□□□ -1.78
USP3-204ENST00000540797 LCE4AQ5TA78 99 aa3.94□□□□□ -1.78
USP3-204ENST00000540797 KRTAP6-1Q3LI64 71 aa3.92□□□□□ -1.78
USP3-204ENST00000540797 KRTAP6-2Q3LI66 62 aa3.88□□□□□ -1.79
USP3-204ENST00000540797 KRTAP9-4Q9BYQ2 154 aa3.87□□□□□ -1.79
USP3-204ENST00000540797 OBSCNQ5VST9 7968 aa3.86□□□□□ -1.79
USP3-204ENST00000540797 KRTAP9-6A8MVA2 160 aa3.85□□□□□ -1.79
USP3-204ENST00000540797 USH2AO75445 5202 aa3.81□□□□□ -1.8
USP3-204ENST00000540797 FCGBPQ9Y6R7 5405 aaPredicted RBP3.62□□□□□ -1.83
USP3-204ENST00000540797 KRTAP5-9P26371 169 aa3.61□□□□□ -1.83
USP3-204ENST00000540797 MACF1Q9UPN3 7388 aaKnown RBP3.61□□□□□ -1.83
USP3-204ENST00000540797 DSTQ03001 7570 aaKnown RBP3.56□□□□□ -1.84
USP3-204ENST00000540797 NEBP20929 6669 aa3.54□□□□□ -1.84
USP3-204ENST00000540797 SSPOA2VEC9 5147 aa3.52□□□□□ -1.85
USP3-204ENST00000540797 KMT2DO14686 5537 aa3.51□□□□□ -1.85
USP3-204ENST00000540797 LCE1CQ5T751 118 aa3.51□□□□□ -1.85
USP3-204ENST00000540797 LCE1EQ5T753 118 aa3.51□□□□□ -1.85
USP3-204ENST00000540797 LCE1FQ5T754 118 aa3.51□□□□□ -1.85
USP3-204ENST00000540797 KRTAP9-9Q9BYP9 154 aa3.4□□□□□ -1.86
USP3-204ENST00000540797 KRTAP4-6Q9BYQ5 205 aa3.39□□□□□ -1.87
USP3-204ENST00000540797 KRTAP20-2Q3LI61 65 aa3.33□□□□□ -1.88
USP3-204ENST00000540797 MUC12Q9UKN1 5478 aa3.33□□□□□ -1.88
USP3-204ENST00000540797 MDN1Q9NU22 5596 aa3.29□□□□□ -1.88
USP3-204ENST00000540797 KRTAP5-4Q6L8H1 288 aa3.13□□□□□ -1.91
USP3-204ENST00000540797 GPR98Q8WXG9 6306 aa3.07□□□□□ -1.92
USP3-204ENST00000540797 KRTAP4-11Q9BYQ6 195 aa3.01□□□□□ -1.93
USP3-204ENST00000540797 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
USP3-204ENST00000540797 KRTAP5-5Q701N2 237 aaPredicted RBP2.96□□□□□ -1.94
USP3-204ENST00000540797 KRTAP4-12Q9BQ66 201 aa2.93□□□□□ -1.94
USP3-204ENST00000540797 KRTAP4-2Q9BYR5 136 aa2.93□□□□□ -1.94
USP3-204ENST00000540797 KRTAP4-4Q9BYR3 166 aa2.89□□□□□ -1.95
USP3-204ENST00000540797 KRTAP5-3Q6L8H2 238 aa2.79□□□□□ -1.96
USP3-204ENST00000540797 MUC5ACP98088 5654 aa2.69□□□□□ -1.98
USP3-204ENST00000540797 AHNAK2Q8IVF2 5795 aa2.6□□□□□ -1.99
USP3-204ENST00000540797 HMCN1Q96RW7 5635 aa2.58□□□□□ -2
USP3-204ENST00000540797 KRTAP5-8O75690 187 aa2.55□□□□□ -2
USP3-204ENST00000540797 KRTAP5-2Q701N4 177 aa2.46□□□□□ -2.02
USP3-204ENST00000540797 KRTAP5-10Q6L8G5 202 aa2.29□□□□□ -2.04
USP3-204ENST00000540797 PHGR1C9JFL3 82 aa2.24□□□□□ -2.05
USP3-204ENST00000540797 MUC5BQ9HC84 5762 aaPredicted RBP2.23□□□□□ -2.05
USP3-204ENST00000540797 AHNAKQ09666 5890 aaKnown RBP2.18□□□□□ -2.06
USP3-204ENST00000540797 KRTAP5-1Q6L8H4 278 aa2.18□□□□□ -2.06
USP3-204ENST00000540797 KRTAP5-11Q6L8G4 156 aa2.18□□□□□ -2.06
USP3-204ENST00000540797 KRTAP21-2Q3LI59 83 aa2.03□□□□□ -2.08
USP3-204ENST00000540797 KRTAP5-7Q6L8G8 165 aa1.94□□□□□ -2.1
USP3-204ENST00000540797 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.92□□□□□ -2.1
USP3-204ENST00000540797 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
USP3-204ENST00000540797 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 13.5 ms