RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 KRTAP10-7P60409 375 aaPredicted RBP3.34□□□□□ -1.87
SNHG1-209ENST00000538654 HMCN2Q8NDA2 5059 aa3.32□□□□□ -1.88
SNHG1-209ENST00000538654 KRTAP4-8A0A0G2JLE6 195 aa3.29□□□□□ -1.88
SNHG1-209ENST00000538654 KRTAP19-5Q3LI72 72 aa3.27□□□□□ -1.89
SNHG1-209ENST00000538654 FAT4Q6V0I7 4981 aa3.27□□□□□ -1.89
SNHG1-209ENST00000538654 UBR4Q5T4S7 5183 aa3.23□□□□□ -1.89
SNHG1-209ENST00000538654 KRTAP2-3P0C7H8 128 aa3.23□□□□□ -1.89
SNHG1-209ENST00000538654 KRTAP2-4Q9BYR9 128 aa3.23□□□□□ -1.89
SNHG1-209ENST00000538654 KRTAP2-1Q9BYU5 128 aa3.23□□□□□ -1.89
SNHG1-209ENST00000538654 KRTAP6-3Q3LI67 103 aa3.23□□□□□ -1.89
SNHG1-209ENST00000538654 RNF213Q63HN8 5207 aa3.18□□□□□ -1.9
SNHG1-209ENST00000538654 KRTAP9-6A8MVA2 160 aa3.17□□□□□ -1.9
SNHG1-209ENST00000538654 LCE3DQ9BYE3 92 aa3.16□□□□□ -1.9
SNHG1-209ENST00000538654 KRTAP4-11Q9BYQ6 195 aa3.14□□□□□ -1.91
SNHG1-209ENST00000538654 MT3P25713 68 aa3.13□□□□□ -1.91
SNHG1-209ENST00000538654 KRTAP4-9Q9BYQ8 210 aa3.11□□□□□ -1.91
SNHG1-209ENST00000538654 KRTAP4-7Q9BYR0 210 aa3.1□□□□□ -1.91
SNHG1-209ENST00000538654 KRTAP4-2Q9BYR5 136 aa3.08□□□□□ -1.92
SNHG1-209ENST00000538654 KRTAP19-7Q3SYF9 63 aa3.05□□□□□ -1.92
SNHG1-209ENST00000538654 KRTAP12-4P60329 112 aa3.01□□□□□ -1.93
SNHG1-209ENST00000538654 MT1LQ93083 61 aa3□□□□□ -1.93
SNHG1-209ENST00000538654 MT1EP04732 61 aa2.95□□□□□ -1.94
SNHG1-209ENST00000538654 KMT2DO14686 5537 aa2.89□□□□□ -1.95
SNHG1-209ENST00000538654 USH2AO75445 5202 aa2.84□□□□□ -1.96
SNHG1-209ENST00000538654 MT1GP13640 62 aa2.79□□□□□ -1.96
SNHG1-209ENST00000538654 KRTAP4-3Q9BYR4 195 aa2.75□□□□□ -1.97
SNHG1-209ENST00000538654 MT1MQ8N339 61 aa2.75□□□□□ -1.97
SNHG1-209ENST00000538654 KRTAP19-3Q7Z4W3 81 aa2.72□□□□□ -1.97
SNHG1-209ENST00000538654 MT1AP04731 61 aa2.71□□□□□ -1.98
SNHG1-209ENST00000538654 CRCT1Q9UGL9 99 aa2.71□□□□□ -1.98
SNHG1-209ENST00000538654 FSIP2Q5CZC0 6907 aa2.7□□□□□ -1.98
SNHG1-209ENST00000538654 KRTAP19-6Q3LI70 58 aa2.67□□□□□ -1.98
SNHG1-209ENST00000538654 SSPOA2VEC9 5147 aa2.64□□□□□ -1.99
SNHG1-209ENST00000538654 MUC19Q7Z5P9 8384 aa2.61□□□□□ -1.99
SNHG1-209ENST00000538654 PRM1P04553 51 aa2.59□□□□□ -1.99
SNHG1-209ENST00000538654 KRTAP5-3Q6L8H2 238 aa2.58□□□□□ -2
SNHG1-209ENST00000538654 KRTAP5-5Q701N2 237 aaPredicted RBP2.56□□□□□ -2
SNHG1-209ENST00000538654 KRTAP6-1Q3LI64 71 aa2.53□□□□□ -2
SNHG1-209ENST00000538654 FCGBPQ9Y6R7 5405 aaPredicted RBP2.48□□□□□ -2.01
SNHG1-209ENST00000538654 SPRR2FQ96RM1 72 aa2.47□□□□□ -2.01
SNHG1-209ENST00000538654 MUC12Q9UKN1 5478 aa2.47□□□□□ -2.01
SNHG1-209ENST00000538654 SYNE1Q8NF91 8797 aaKnown RBP2.46□□□□□ -2.02
SNHG1-209ENST00000538654 KRTAP6-2Q3LI66 62 aa2.43□□□□□ -2.02
SNHG1-209ENST00000538654 DSTQ03001 7570 aaKnown RBP2.39□□□□□ -2.03
SNHG1-209ENST00000538654 OBSCNQ5VST9 7968 aa2.36□□□□□ -2.03
SNHG1-209ENST00000538654 SPRR2AP35326 72 aa2.3□□□□□ -2.04
SNHG1-209ENST00000538654 MACF1Q9UPN3 7388 aaKnown RBP2.29□□□□□ -2.04
SNHG1-209ENST00000538654 KRTAP5-11Q6L8G4 156 aa2.26□□□□□ -2.05
SNHG1-209ENST00000538654 SYNE2Q8WXH0 6885 aaKnown RBP2.26□□□□□ -2.05
SNHG1-209ENST00000538654 LCE1CQ5T751 118 aa2.25□□□□□ -2.05
SNHG1-209ENST00000538654 LCE1BQ5T7P3 118 aa2.25□□□□□ -2.05
SNHG1-209ENST00000538654 SPRR2EP22531 72 aa2.23□□□□□ -2.05
SNHG1-209ENST00000538654 MDN1Q9NU22 5596 aa2.21□□□□□ -2.06
SNHG1-209ENST00000538654 KRTAP5-9P26371 169 aa2.2□□□□□ -2.06
SNHG1-209ENST00000538654 SPRR2BP35325 72 aa2.18□□□□□ -2.06
SNHG1-209ENST00000538654 SPRR2DP22532 72 aa2.1□□□□□ -2.07
SNHG1-209ENST00000538654 KRTAP5-4Q6L8H1 288 aa1.98□□□□□ -2.09
SNHG1-209ENST00000538654 GPR98Q8WXG9 6306 aa1.98□□□□□ -2.09
SNHG1-209ENST00000538654 KRTAP5-1Q6L8H4 278 aa1.93□□□□□ -2.1
SNHG1-209ENST00000538654 KRTAP5-2Q701N4 177 aa1.9□□□□□ -2.1
SNHG1-209ENST00000538654 HMCN1Q96RW7 5635 aa1.88□□□□□ -2.11
SNHG1-209ENST00000538654 KRTAP5-10Q6L8G5 202 aa1.87□□□□□ -2.11
SNHG1-209ENST00000538654 MUC5ACP98088 5654 aa1.85□□□□□ -2.11
SNHG1-209ENST00000538654 KRTAP20-2Q3LI61 65 aa1.85□□□□□ -2.11
SNHG1-209ENST00000538654 MT4P47944 62 aa1.81□□□□□ -2.12
SNHG1-209ENST00000538654 KRTAP20-1Q3LI63 56 aa1.79□□□□□ -2.12
SNHG1-209ENST00000538654 NEBP20929 6669 aa1.78□□□□□ -2.12
SNHG1-209ENST00000538654 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.75□□□□□ -2.13
SNHG1-209ENST00000538654 MUC5BQ9HC84 5762 aaPredicted RBP1.69□□□□□ -2.14
SNHG1-209ENST00000538654 KRTAP4-4Q9BYR3 166 aa1.69□□□□□ -2.14
SNHG1-209ENST00000538654 KRTAP21-1Q3LI58 79 aa1.68□□□□□ -2.14
SNHG1-209ENST00000538654 AHNAKQ09666 5890 aaKnown RBP1.64□□□□□ -2.15
SNHG1-209ENST00000538654 KRTAP21-2Q3LI59 83 aa1.63□□□□□ -2.15
SNHG1-209ENST00000538654 KRTAP5-7Q6L8G8 165 aa1.58□□□□□ -2.16
SNHG1-209ENST00000538654 AHNAK2Q8IVF2 5795 aa1.54□□□□□ -2.16
SNHG1-209ENST00000538654 KRTAP5-8O75690 187 aa1.44□□□□□ -2.18
SNHG1-209ENST00000538654 PHGR1C9JFL3 82 aa1.23□□□□□ -2.21
SNHG1-209ENST00000538654 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 63.9 ms