RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 KRTAP9-2Q9BYQ4 174 aa3.49□□□□□ -1.85
CLIP1-209ENST00000537178 KRTAP9-6A8MVA2 160 aa3.49□□□□□ -1.85
CLIP1-209ENST00000537178 USH2AO75445 5202 aa3.46□□□□□ -1.85
CLIP1-209ENST00000537178 KRTAP19-3Q7Z4W3 81 aa3.45□□□□□ -1.86
CLIP1-209ENST00000537178 MT1LQ93083 61 aa3.43□□□□□ -1.86
CLIP1-209ENST00000537178 LCE2DQ5TA82 110 aaPredicted RBP3.43□□□□□ -1.86
CLIP1-209ENST00000537178 KRTAP2-3P0C7H8 128 aa3.4□□□□□ -1.87
CLIP1-209ENST00000537178 KRTAP2-4Q9BYR9 128 aa3.4□□□□□ -1.87
CLIP1-209ENST00000537178 KRTAP2-1Q9BYU5 128 aa3.4□□□□□ -1.87
CLIP1-209ENST00000537178 MT3P25713 68 aa3.37□□□□□ -1.87
CLIP1-209ENST00000537178 MT1EP04732 61 aa3.33□□□□□ -1.88
CLIP1-209ENST00000537178 KRTAP19-7Q3SYF9 63 aa3.33□□□□□ -1.88
CLIP1-209ENST00000537178 KRTAP4-7Q9BYR0 210 aa3.32□□□□□ -1.88
CLIP1-209ENST00000537178 PRM1P04553 51 aa3.28□□□□□ -1.88
CLIP1-209ENST00000537178 SSPOA2VEC9 5147 aa3.27□□□□□ -1.89
CLIP1-209ENST00000537178 MT1MQ8N339 61 aa3.26□□□□□ -1.89
CLIP1-209ENST00000537178 LCE1BQ5T7P3 118 aa3.23□□□□□ -1.89
CLIP1-209ENST00000537178 MT4P47944 62 aa3.22□□□□□ -1.89
CLIP1-209ENST00000537178 LCE2AQ5TA79 106 aaPredicted RBP3.21□□□□□ -1.9
CLIP1-209ENST00000537178 LCE1DQ5T752 114 aa3.2□□□□□ -1.9
CLIP1-209ENST00000537178 KRTAP9-7A8MTY7 169 aa3.19□□□□□ -1.9
CLIP1-209ENST00000537178 KRTAP19-6Q3LI70 58 aa3.13□□□□□ -1.91
CLIP1-209ENST00000537178 KRTAP20-1Q3LI63 56 aa3.13□□□□□ -1.91
CLIP1-209ENST00000537178 LOC100996750A0A140TA64 210 aa3.11□□□□□ -1.91
CLIP1-209ENST00000537178 MT1AP04731 61 aa3.1□□□□□ -1.91
CLIP1-209ENST00000537178 FSIP2Q5CZC0 6907 aa3.08□□□□□ -1.92
CLIP1-209ENST00000537178 KRTAP6-3Q3LI67 103 aa3.07□□□□□ -1.92
CLIP1-209ENST00000537178 KRTAP4-3Q9BYR4 195 aa3.07□□□□□ -1.92
CLIP1-209ENST00000537178 OBSCNQ5VST9 7968 aa3.06□□□□□ -1.92
CLIP1-209ENST00000537178 FCGBPQ9Y6R7 5405 aaPredicted RBP3.05□□□□□ -1.92
CLIP1-209ENST00000537178 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.03□□□□□ -1.92
CLIP1-209ENST00000537178 LCE5AQ5TCM9 118 aa3.02□□□□□ -1.93
CLIP1-209ENST00000537178 MUC12Q9UKN1 5478 aa2.99□□□□□ -1.93
CLIP1-209ENST00000537178 KRTAP4-9Q9BYQ8 210 aa2.97□□□□□ -1.93
CLIP1-209ENST00000537178 LCE1AQ5T7P2 110 aa2.89□□□□□ -1.95
CLIP1-209ENST00000537178 KRTAP2-2Q9BYT5 123 aa2.86□□□□□ -1.95
CLIP1-209ENST00000537178 KRTAP6-2Q3LI66 62 aa2.84□□□□□ -1.95
CLIP1-209ENST00000537178 SYNE2Q8WXH0 6885 aaKnown RBP2.81□□□□□ -1.96
CLIP1-209ENST00000537178 KRTAP6-1Q3LI64 71 aa2.8□□□□□ -1.96
CLIP1-209ENST00000537178 KRTAP9-4Q9BYQ2 154 aa2.8□□□□□ -1.96
CLIP1-209ENST00000537178 LCE1CQ5T751 118 aa2.79□□□□□ -1.96
CLIP1-209ENST00000537178 LCE1EQ5T753 118 aa2.79□□□□□ -1.96
CLIP1-209ENST00000537178 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
CLIP1-209ENST00000537178 KRTAP5-5Q701N2 237 aaPredicted RBP2.79□□□□□ -1.96
CLIP1-209ENST00000537178 DSTQ03001 7570 aaKnown RBP2.78□□□□□ -1.96
CLIP1-209ENST00000537178 LCE4AQ5TA78 99 aa2.78□□□□□ -1.96
CLIP1-209ENST00000537178 MDN1Q9NU22 5596 aa2.68□□□□□ -1.98
CLIP1-209ENST00000537178 MACF1Q9UPN3 7388 aaKnown RBP2.65□□□□□ -1.98
CLIP1-209ENST00000537178 MUC19Q7Z5P9 8384 aa2.64□□□□□ -1.99
CLIP1-209ENST00000537178 NEBP20929 6669 aa2.55□□□□□ -2
CLIP1-209ENST00000537178 KRTAP5-9P26371 169 aa2.54□□□□□ -2
CLIP1-209ENST00000537178 GPR98Q8WXG9 6306 aa2.53□□□□□ -2.01
CLIP1-209ENST00000537178 KRTAP9-9Q9BYP9 154 aa2.5□□□□□ -2.01
CLIP1-209ENST00000537178 KRTAP4-11Q9BYQ6 195 aa2.39□□□□□ -2.03
CLIP1-209ENST00000537178 KRTAP5-4Q6L8H1 288 aa2.29□□□□□ -2.04
CLIP1-209ENST00000537178 KRTAP20-2Q3LI61 65 aa2.24□□□□□ -2.05
CLIP1-209ENST00000537178 KRTAP4-6Q9BYQ5 205 aa2.22□□□□□ -2.05
CLIP1-209ENST00000537178 KRTAP5-2Q701N4 177 aa2.21□□□□□ -2.06
CLIP1-209ENST00000537178 KRTAP4-4Q9BYR3 166 aa2.16□□□□□ -2.06
CLIP1-209ENST00000537178 MUC5ACP98088 5654 aa2.14□□□□□ -2.07
CLIP1-209ENST00000537178 KRTAP4-12Q9BQ66 201 aa2.12□□□□□ -2.07
CLIP1-209ENST00000537178 KRTAP4-2Q9BYR5 136 aa2.12□□□□□ -2.07
CLIP1-209ENST00000537178 KRTAP5-1Q6L8H4 278 aa2.07□□□□□ -2.08
CLIP1-209ENST00000537178 KRTAP5-3Q6L8H2 238 aa2.04□□□□□ -2.08
CLIP1-209ENST00000537178 KRTAP5-10Q6L8G5 202 aa2.02□□□□□ -2.09
CLIP1-209ENST00000537178 HMCN1Q96RW7 5635 aa2.02□□□□□ -2.09
CLIP1-209ENST00000537178 AHNAK2Q8IVF2 5795 aa1.98□□□□□ -2.09
CLIP1-209ENST00000537178 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.84□□□□□ -2.11
CLIP1-209ENST00000537178 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
CLIP1-209ENST00000537178 KRTAP5-7Q6L8G8 165 aa1.78□□□□□ -2.12
CLIP1-209ENST00000537178 KRTAP21-1Q3LI58 79 aa1.77□□□□□ -2.13
CLIP1-209ENST00000537178 AHNAKQ09666 5890 aaKnown RBP1.76□□□□□ -2.13
CLIP1-209ENST00000537178 KRTAP5-8O75690 187 aa1.74□□□□□ -2.13
CLIP1-209ENST00000537178 PHGR1C9JFL3 82 aa1.6□□□□□ -2.15
CLIP1-209ENST00000537178 MUC5BQ9HC84 5762 aaPredicted RBP1.59□□□□□ -2.16
CLIP1-209ENST00000537178 KRTAP5-11Q6L8G4 156 aa1.56□□□□□ -2.16
CLIP1-209ENST00000537178 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 35 ms