RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 NISCHQ9Y2I1 1504 aa19.08■□□□□ 0.64
CLIP1-209ENST00000537178 DCAF8L2P0C7V8 631 aa17.94■□□□□ 0.46
CLIP1-209ENST00000537178 PELP1Q8IZL8 1130 aaKnown RBP17.2■□□□□ 0.34
CLIP1-209ENST00000537178 SUPT5HO00267 1087 aaKnown RBP17.05■□□□□ 0.32
CLIP1-209ENST00000537178 APLP2Q06481 763 aa16.65■□□□□ 0.26
CLIP1-209ENST00000537178 EHMT2Q96KQ7 1210 aa16.61■□□□□ 0.25
CLIP1-209ENST00000537178 SHROOM4Q9ULL8 1493 aa16.44■□□□□ 0.22
CLIP1-209ENST00000537178 ERICH6Q7L0X2 663 aa16.43■□□□□ 0.22
CLIP1-209ENST00000537178 FAM9AQ8IZU1 332 aaPredicted RBP16.42■□□□□ 0.22
CLIP1-209ENST00000537178 CCER1Q8TC90 406 aaPredicted RBP16.42■□□□□ 0.22
CLIP1-209ENST00000537178 CENPBP07199 599 aaPredicted RBP16.31■□□□□ 0.2
CLIP1-209ENST00000537178 ZCCHC6Q5VYS8 1495 aaKnown RBP16.3■□□□□ 0.2
CLIP1-209ENST00000537178 CCDC180Q9P1Z9 1646 aa16.23■□□□□ 0.19
CLIP1-209ENST00000537178 MYO15BQ96JP2 1530 aa16.16■□□□□ 0.18
CLIP1-209ENST00000537178 PCGF6Q9BYE7 350 aa16.15■□□□□ 0.18
CLIP1-209ENST00000537178 ZEB1P37275 1124 aaPredicted RBP16.12■□□□□ 0.17
CLIP1-209ENST00000537178 TTBK1Q5TCY1 1321 aaPredicted RBP16.11■□□□□ 0.17
CLIP1-209ENST00000537178 MYT1Q01538 1121 aa16.04■□□□□ 0.16
CLIP1-209ENST00000537178 NEFLP07196 543 aa16.04■□□□□ 0.16
CLIP1-209ENST00000537178 RANGAP1P46060 587 aaPredicted RBP15.88■□□□□ 0.13
CLIP1-209ENST00000537178 ATP1B4Q9UN42 357 aaPredicted RBP15.87■□□□□ 0.13
CLIP1-209ENST00000537178 DCAF1Q9Y4B6 1507 aa15.85■□□□□ 0.13
CLIP1-209ENST00000537178 HRCP23327 699 aa15.84■□□□□ 0.13
CLIP1-209ENST00000537178 TRIM41Q8WV44 630 aa15.8■□□□□ 0.12
CLIP1-209ENST00000537178 CHIC1Q5VXU3 224 aa15.79■□□□□ 0.12
CLIP1-209ENST00000537178 YTHDC1Q96MU7 727 aaKnown RBP15.73■□□□□ 0.11
CLIP1-209ENST00000537178 UBTFP17480 764 aaKnown RBP15.73■□□□□ 0.11
CLIP1-209ENST00000537178 DAXXQ9UER7 740 aaPredicted RBP15.7■□□□□ 0.1
CLIP1-209ENST00000537178 ABCC9O60706 1549 aa15.47■□□□□ 0.07
CLIP1-209ENST00000537178 POLR3GLQ9BT43 218 aa15.4■□□□□ 0.06
CLIP1-209ENST00000537178 PPARGC1BQ86YN6 1023 aaKnown RBP15.39■□□□□ 0.05
CLIP1-209ENST00000537178 TRIM26Q12899 539 aaPredicted RBP15.37■□□□□ 0.05
CLIP1-209ENST00000537178 MYT1LQ9UL68 1186 aa15.37■□□□□ 0.05
CLIP1-209ENST00000537178 RTL5Q5HYW3 569 aaPredicted RBP15.32■□□□□ 0.04
CLIP1-209ENST00000537178 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.29■□□□□ 0.04
CLIP1-209ENST00000537178 HNRNPUL2Q1KMD3 747 aaKnown RBP15.29■□□□□ 0.04
CLIP1-209ENST00000537178 ITGAEP38570 1179 aa15.28■□□□□ 0.04
CLIP1-209ENST00000537178 ZNF316A6NFI3 1004 aaPredicted RBP15.26■□□□□ 0.03
CLIP1-209ENST00000537178 CLSPNQ9HAW4 1339 aa15.24■□□□□ 0.03
CLIP1-209ENST00000537178 LOC105371045A0A1W2PR82 267 aa15.2■□□□□ 0.02
CLIP1-209ENST00000537178 CNGB1Q14028 1251 aaPredicted RBP15.19■□□□□ 0.02
CLIP1-209ENST00000537178 RSF1Q96T23 1441 aaPredicted RBP15.18■□□□□ 0.02
CLIP1-209ENST00000537178 EIF4G1Q04637 1599 aaKnown RBP15.17■□□□□ 0.02
CLIP1-209ENST00000537178 SLC4A1APQ9BWU0 796 aaKnown RBP15.15■□□□□ 0.02
CLIP1-209ENST00000537178 RB1CC1Q8TDY2 1594 aa15.14■□□□□ 0.01
CLIP1-209ENST00000537178 DIEXFQ68CQ4 756 aaKnown RBP14.99□□□□□ -0.01
CLIP1-209ENST00000537178 ZBTB47Q9UFB7 747 aaPredicted RBP14.97□□□□□ -0.01
CLIP1-209ENST00000537178 SCRIBQ14160 1630 aa14.93□□□□□ -0.02
CLIP1-209ENST00000537178 CDK11AQ9UQ88 783 aaPredicted RBP14.87□□□□□ -0.03
CLIP1-209ENST00000537178 SCAF1Q9H7N4 1312 aaKnown RBP14.86□□□□□ -0.03
CLIP1-209ENST00000537178 TRIM52Q96A61 297 aa14.86□□□□□ -0.03
CLIP1-209ENST00000537178 MROH2BQ7Z745 1585 aa14.85□□□□□ -0.03
CLIP1-209ENST00000537178 FAM50AQ14320 339 aaKnown RBP14.84□□□□□ -0.03
CLIP1-209ENST00000537178 GTF3C3Q9Y5Q9 886 aa14.82□□□□□ -0.04
CLIP1-209ENST00000537178 WIZO95785 1651 aa14.82□□□□□ -0.04
CLIP1-209ENST00000537178 CECR2Q9BXF3 1484 aa14.82□□□□□ -0.04
CLIP1-209ENST00000537178 ANP32CO43423 234 aa14.81□□□□□ -0.04
CLIP1-209ENST00000537178 BAZ1AQ9NRL2 1556 aaPredicted RBP14.8□□□□□ -0.04
CLIP1-209ENST00000537178 BCANQ96GW7 911 aa14.8□□□□□ -0.04
CLIP1-209ENST00000537178 NACADO15069 1562 aa14.78□□□□□ -0.04
CLIP1-209ENST00000537178 NEUROD1Q13562 356 aa14.76□□□□□ -0.05
CLIP1-209ENST00000537178 CANXP27824 592 aaKnown RBP14.75□□□□□ -0.05
CLIP1-209ENST00000537178 NEFMP07197 916 aa14.74□□□□□ -0.05
CLIP1-209ENST00000537178 ZNF326Q5BKZ1 582 aaKnown RBP14.72□□□□□ -0.05
CLIP1-209ENST00000537178 WRNQ14191 1432 aaPredicted RBP eCLIP14.7□□□□□ -0.069e-6■■■■■ 50.1
CLIP1-209ENST00000537178 SLC24A1O60721 1099 aa14.68□□□□□ -0.06
CLIP1-209ENST00000537178 ANP32AP39687 249 aaKnown RBP14.68□□□□□ -0.06
CLIP1-209ENST00000537178 ACIN1Q9UKV3 1341 aaKnown RBP14.66□□□□□ -0.06
CLIP1-209ENST00000537178 BCL11AQ9H165 835 aa14.65□□□□□ -0.06
CLIP1-209ENST00000537178 ANP32BQ92688 251 aaKnown RBP14.63□□□□□ -0.07
CLIP1-209ENST00000537178 UNC13AQ9UPW8 1703 aa14.6□□□□□ -0.07
CLIP1-209ENST00000537178 SMARCA2P51531 1590 aa14.56□□□□□ -0.08
CLIP1-209ENST00000537178 TOP2AP11388 1531 aaKnown RBP14.55□□□□□ -0.08
CLIP1-209ENST00000537178 EIF5BO60841 1220 aaKnown RBP14.53□□□□□ -0.08
CLIP1-209ENST00000537178 HSP90AA1P07900 732 aaKnown RBP14.52□□□□□ -0.09
CLIP1-209ENST00000537178 NPM2Q86SE8 214 aaKnown RBP14.51□□□□□ -0.09
CLIP1-209ENST00000537178 CCDC88BA6NC98 1476 aa14.5□□□□□ -0.09
CLIP1-209ENST00000537178 SMARCA4P51532 1647 aa14.49□□□□□ -0.09
CLIP1-209ENST00000537178 UPF2Q9HAU5 1272 aaKnown RBP14.49□□□□□ -0.09
CLIP1-209ENST00000537178 ABCC8Q09428 1581 aa14.48□□□□□ -0.09
CLIP1-209ENST00000537178 GLIPR1L2Q4G1C9 344 aa14.48□□□□□ -0.09
CLIP1-209ENST00000537178 PEG3Q9GZU2 1588 aa14.42□□□□□ -0.1
CLIP1-209ENST00000537178 FBLN2P98095 1184 aa14.41□□□□□ -0.1
CLIP1-209ENST00000537178 RUSC2Q8N2Y8 1516 aa14.38□□□□□ -0.11
CLIP1-209ENST00000537178 CEP162Q5TB80 1403 aa14.37□□□□□ -0.11
CLIP1-209ENST00000537178 TNIKQ9UKE5 1360 aa14.37□□□□□ -0.11
CLIP1-209ENST00000537178 SOGA1O94964 1423 aa14.36□□□□□ -0.11
CLIP1-209ENST00000537178 FKBP8Q14318 412 aa14.34□□□□□ -0.11
CLIP1-209ENST00000537178 KIF21BO75037 1637 aa14.33□□□□□ -0.12
CLIP1-209ENST00000537178 ESF1Q9H501 851 aaKnown RBP14.33□□□□□ -0.12
CLIP1-209ENST00000537178 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.32□□□□□ -0.12
CLIP1-209ENST00000537178 ZNF777Q9ULD5 760 aaPredicted RBP14.3□□□□□ -0.12
CLIP1-209ENST00000537178 HNRNPUQ00839 825 aaKnown RBP eCLIP14.3□□□□□ -0.12
CLIP1-209ENST00000537178 BICRAQ9NZM4 1560 aa14.28□□□□□ -0.12
CLIP1-209ENST00000537178 EEA1Q15075 1411 aa14.27□□□□□ -0.13
CLIP1-209ENST00000537178 TONSLQ96HA7 1378 aa14.27□□□□□ -0.13
CLIP1-209ENST00000537178 SYNJ1O43426 1573 aa14.26□□□□□ -0.13
CLIP1-209ENST00000537178 STAG3Q9UJ98 1225 aa14.26□□□□□ -0.13
CLIP1-209ENST00000537178 P3H3Q8IVL6 736 aa14.26□□□□□ -0.13
CLIP1-209ENST00000537178 CCDC136Q96JN2 1154 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms