RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 MUC2Q02817 5179 aa4.3□□□□□ -1.72
TCOF1-213ENST00000514442 LCE2AQ5TA79 106 aaPredicted RBP4.28□□□□□ -1.72
TCOF1-213ENST00000514442 KRTAP2-3P0C7H8 128 aa4.27□□□□□ -1.73
TCOF1-213ENST00000514442 KRTAP2-4Q9BYR9 128 aa4.27□□□□□ -1.73
TCOF1-213ENST00000514442 KRTAP2-1Q9BYU5 128 aa4.27□□□□□ -1.73
TCOF1-213ENST00000514442 KRTAP19-6Q3LI70 58 aa4.25□□□□□ -1.73
TCOF1-213ENST00000514442 KRTAP9-2Q9BYQ4 174 aa4.24□□□□□ -1.73
TCOF1-213ENST00000514442 KRTAP4-3Q9BYR4 195 aa4.17□□□□□ -1.74
TCOF1-213ENST00000514442 MT1MQ8N339 61 aa4.16□□□□□ -1.74
TCOF1-213ENST00000514442 LOC100996750A0A140TA64 210 aa4.15□□□□□ -1.75
TCOF1-213ENST00000514442 LCE3DQ9BYE3 92 aa4.12□□□□□ -1.75
TCOF1-213ENST00000514442 LCE3EQ5T5B0 92 aa4.1□□□□□ -1.75
TCOF1-213ENST00000514442 KRTAP19-7Q3SYF9 63 aa4.08□□□□□ -1.76
TCOF1-213ENST00000514442 LCE2DQ5TA82 110 aaPredicted RBP4.08□□□□□ -1.76
TCOF1-213ENST00000514442 KRTAP9-6A8MVA2 160 aa4.07□□□□□ -1.76
TCOF1-213ENST00000514442 PRM1P04553 51 aa4.02□□□□□ -1.77
TCOF1-213ENST00000514442 SYNE1Q8NF91 8797 aaKnown RBP3.99□□□□□ -1.77
TCOF1-213ENST00000514442 MT4P47944 62 aa3.98□□□□□ -1.77
TCOF1-213ENST00000514442 KRTAP9-6A0A140TA67 174 aa3.92□□□□□ -1.78
TCOF1-213ENST00000514442 SYNE2Q8WXH0 6885 aaKnown RBP3.9□□□□□ -1.78
TCOF1-213ENST00000514442 MT3P25713 68 aa3.86□□□□□ -1.79
TCOF1-213ENST00000514442 USH2AO75445 5202 aa3.81□□□□□ -1.8
TCOF1-213ENST00000514442 KRTAP4-9Q9BYQ8 210 aa3.8□□□□□ -1.8
TCOF1-213ENST00000514442 MT1AP04731 61 aa3.78□□□□□ -1.8
TCOF1-213ENST00000514442 KMT2DO14686 5537 aa3.74□□□□□ -1.81
TCOF1-213ENST00000514442 KRTAP9-7A8MTY7 169 aa3.72□□□□□ -1.81
TCOF1-213ENST00000514442 LCE1DQ5T752 114 aa3.7□□□□□ -1.82
TCOF1-213ENST00000514442 LCE5AQ5TCM9 118 aa3.69□□□□□ -1.82
TCOF1-213ENST00000514442 LCE1BQ5T7P3 118 aa3.69□□□□□ -1.82
TCOF1-213ENST00000514442 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.68□□□□□ -1.82
TCOF1-213ENST00000514442 KRTAP6-3Q3LI67 103 aa3.68□□□□□ -1.82
TCOF1-213ENST00000514442 FCGBPQ9Y6R7 5405 aaPredicted RBP3.67□□□□□ -1.82
TCOF1-213ENST00000514442 KRTAP6-1Q3LI64 71 aa3.67□□□□□ -1.82
TCOF1-213ENST00000514442 LCE1AQ5T7P2 110 aa3.67□□□□□ -1.82
TCOF1-213ENST00000514442 OBSCNQ5VST9 7968 aa3.66□□□□□ -1.82
TCOF1-213ENST00000514442 KRTAP20-1Q3LI63 56 aa3.61□□□□□ -1.83
TCOF1-213ENST00000514442 DSTQ03001 7570 aaKnown RBP3.6□□□□□ -1.83
TCOF1-213ENST00000514442 KRTAP6-2Q3LI66 62 aa3.59□□□□□ -1.83
TCOF1-213ENST00000514442 MACF1Q9UPN3 7388 aaKnown RBP3.54□□□□□ -1.84
TCOF1-213ENST00000514442 KRTAP9-4Q9BYQ2 154 aa3.51□□□□□ -1.85
TCOF1-213ENST00000514442 SSPOA2VEC9 5147 aa3.49□□□□□ -1.85
TCOF1-213ENST00000514442 MUC12Q9UKN1 5478 aa3.45□□□□□ -1.86
TCOF1-213ENST00000514442 LCE4AQ5TA78 99 aa3.41□□□□□ -1.86
TCOF1-213ENST00000514442 KRTAP2-2Q9BYT5 123 aa3.41□□□□□ -1.86
TCOF1-213ENST00000514442 KRTAP5-9P26371 169 aa3.29□□□□□ -1.88
TCOF1-213ENST00000514442 KRTAP5-5Q701N2 237 aaPredicted RBP3.25□□□□□ -1.89
TCOF1-213ENST00000514442 NEBP20929 6669 aa3.23□□□□□ -1.89
TCOF1-213ENST00000514442 KRTAP4-6Q9BYQ5 205 aa3.15□□□□□ -1.91
TCOF1-213ENST00000514442 MDN1Q9NU22 5596 aa3.13□□□□□ -1.91
TCOF1-213ENST00000514442 LCE1EQ5T753 118 aa3.05□□□□□ -1.92
TCOF1-213ENST00000514442 LCE1CQ5T751 118 aa3.04□□□□□ -1.92
TCOF1-213ENST00000514442 LCE1FQ5T754 118 aa3.04□□□□□ -1.92
TCOF1-213ENST00000514442 KRTAP20-2Q3LI61 65 aa3.03□□□□□ -1.92
TCOF1-213ENST00000514442 KRTAP4-11Q9BYQ6 195 aa2.95□□□□□ -1.94
TCOF1-213ENST00000514442 KRTAP9-9Q9BYP9 154 aa2.89□□□□□ -1.95
TCOF1-213ENST00000514442 MUC19Q7Z5P9 8384 aa2.84□□□□□ -1.95
TCOF1-213ENST00000514442 KRTAP5-4Q6L8H1 288 aa2.79□□□□□ -1.96
TCOF1-213ENST00000514442 GPR98Q8WXG9 6306 aa2.7□□□□□ -1.98
TCOF1-213ENST00000514442 KRTAP4-4Q9BYR3 166 aa2.7□□□□□ -1.98
TCOF1-213ENST00000514442 KRTAP4-12Q9BQ66 201 aa2.68□□□□□ -1.98
TCOF1-213ENST00000514442 KRTAP4-2Q9BYR5 136 aa2.68□□□□□ -1.98
TCOF1-213ENST00000514442 MUC5ACP98088 5654 aa2.63□□□□□ -1.99
TCOF1-213ENST00000514442 KRTAP5-3Q6L8H2 238 aa2.48□□□□□ -2.01
TCOF1-213ENST00000514442 HMCN1Q96RW7 5635 aa2.48□□□□□ -2.01
TCOF1-213ENST00000514442 KRTAP5-10Q6L8G5 202 aa2.38□□□□□ -2.03
TCOF1-213ENST00000514442 AHNAK2Q8IVF2 5795 aa2.34□□□□□ -2.03
TCOF1-213ENST00000514442 KRTAP5-8O75690 187 aa2.32□□□□□ -2.04
TCOF1-213ENST00000514442 KRTAP5-2Q701N4 177 aa2.31□□□□□ -2.04
TCOF1-213ENST00000514442 KRTAP21-1Q3LI58 79 aa2.14□□□□□ -2.07
TCOF1-213ENST00000514442 MUC5BQ9HC84 5762 aaPredicted RBP2.08□□□□□ -2.08
TCOF1-213ENST00000514442 KRTAP5-1Q6L8H4 278 aa2.06□□□□□ -2.08
TCOF1-213ENST00000514442 AHNAKQ09666 5890 aaKnown RBP2.02□□□□□ -2.09
TCOF1-213ENST00000514442 KRTAP5-11Q6L8G4 156 aa1.97□□□□□ -2.09
TCOF1-213ENST00000514442 KRTAP21-2Q3LI59 83 aa1.97□□□□□ -2.09
TCOF1-213ENST00000514442 KRTAP5-7Q6L8G8 165 aa1.93□□□□□ -2.1
TCOF1-213ENST00000514442 PHGR1C9JFL3 82 aa1.91□□□□□ -2.1
TCOF1-213ENST00000514442 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.83□□□□□ -2.12
TCOF1-213ENST00000514442 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 10.8 ms