RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MT1LQ93083 61 aa5.43□□□□□ -1.54
CCDC88B-209ENST00000494080 MT1EP04732 61 aa5.42□□□□□ -1.54
CCDC88B-209ENST00000494080 KRTAP19-3Q7Z4W3 81 aa5.35□□□□□ -1.55
CCDC88B-209ENST00000494080 KRTAP19-6Q3LI70 58 aa5.33□□□□□ -1.56
CCDC88B-209ENST00000494080 KRTAP19-7Q3SYF9 63 aa5.27□□□□□ -1.57
CCDC88B-209ENST00000494080 USH2AO75445 5202 aa5.27□□□□□ -1.57
CCDC88B-209ENST00000494080 KRTAP9-2Q9BYQ4 174 aa5.27□□□□□ -1.57
CCDC88B-209ENST00000494080 SPRR2DP22532 72 aa5.24□□□□□ -1.57
CCDC88B-209ENST00000494080 KRTAP4-3Q9BYR4 195 aa5.24□□□□□ -1.57
CCDC88B-209ENST00000494080 LOC100996750A0A140TA64 210 aa5.19□□□□□ -1.58
CCDC88B-209ENST00000494080 MT1MQ8N339 61 aa5.19□□□□□ -1.58
CCDC88B-209ENST00000494080 KRTAP2-3P0C7H8 128 aa5.15□□□□□ -1.58
CCDC88B-209ENST00000494080 KRTAP2-4Q9BYR9 128 aa5.15□□□□□ -1.58
CCDC88B-209ENST00000494080 KRTAP2-1Q9BYU5 128 aa5.15□□□□□ -1.58
CCDC88B-209ENST00000494080 KRTAP9-6A8MVA2 160 aa5.14□□□□□ -1.59
CCDC88B-209ENST00000494080 KRTAP9-6A0A140TA67 174 aa5.13□□□□□ -1.59
CCDC88B-209ENST00000494080 LCE3DQ9BYE3 92 aa5.13□□□□□ -1.59
CCDC88B-209ENST00000494080 DSTQ03001 7570 aaKnown RBP5.11□□□□□ -1.59
CCDC88B-209ENST00000494080 KMT2DO14686 5537 aa5.1□□□□□ -1.59
CCDC88B-209ENST00000494080 FCGBPQ9Y6R7 5405 aaPredicted RBP5.1□□□□□ -1.59
CCDC88B-209ENST00000494080 LCE3EQ5T5B0 92 aa5.07□□□□□ -1.6
CCDC88B-209ENST00000494080 LCE2DQ5TA82 110 aaPredicted RBP5.05□□□□□ -1.6
CCDC88B-209ENST00000494080 SYNE2Q8WXH0 6885 aaKnown RBP4.98□□□□□ -1.61
CCDC88B-209ENST00000494080 PRM1P04553 51 aa4.92□□□□□ -1.62
CCDC88B-209ENST00000494080 KRTAP4-9Q9BYQ8 210 aa4.85□□□□□ -1.63
CCDC88B-209ENST00000494080 MACF1Q9UPN3 7388 aaKnown RBP4.84□□□□□ -1.64
CCDC88B-209ENST00000494080 MUC12Q9UKN1 5478 aa4.78□□□□□ -1.64
CCDC88B-209ENST00000494080 KRTAP9-7A8MTY7 169 aa4.77□□□□□ -1.65
CCDC88B-209ENST00000494080 MT4P47944 62 aa4.76□□□□□ -1.65
CCDC88B-209ENST00000494080 SSPOA2VEC9 5147 aa4.76□□□□□ -1.65
CCDC88B-209ENST00000494080 LCE5AQ5TCM9 118 aa4.72□□□□□ -1.65
CCDC88B-209ENST00000494080 MT1AP04731 61 aa4.7□□□□□ -1.66
CCDC88B-209ENST00000494080 MT3P25713 68 aa4.7□□□□□ -1.66
CCDC88B-209ENST00000494080 LCE1AQ5T7P2 110 aa4.63□□□□□ -1.67
CCDC88B-209ENST00000494080 KRTAP6-1Q3LI64 71 aa4.62□□□□□ -1.67
CCDC88B-209ENST00000494080 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.57□□□□□ -1.68
CCDC88B-209ENST00000494080 KRTAP20-1Q3LI63 56 aa4.56□□□□□ -1.68
CCDC88B-209ENST00000494080 LCE1BQ5T7P3 118 aa4.56□□□□□ -1.68
CCDC88B-209ENST00000494080 LCE1DQ5T752 114 aa4.55□□□□□ -1.68
CCDC88B-209ENST00000494080 KRTAP6-3Q3LI67 103 aa4.54□□□□□ -1.68
CCDC88B-209ENST00000494080 MUC19Q7Z5P9 8384 aa4.43□□□□□ -1.7
CCDC88B-209ENST00000494080 KRTAP6-2Q3LI66 62 aa4.42□□□□□ -1.7
CCDC88B-209ENST00000494080 KRTAP9-4Q9BYQ2 154 aa4.35□□□□□ -1.71
CCDC88B-209ENST00000494080 MDN1Q9NU22 5596 aa4.33□□□□□ -1.72
CCDC88B-209ENST00000494080 KRTAP2-2Q9BYT5 123 aa4.25□□□□□ -1.73
CCDC88B-209ENST00000494080 KRTAP5-9P26371 169 aa4.22□□□□□ -1.73
CCDC88B-209ENST00000494080 LCE4AQ5TA78 99 aa4.12□□□□□ -1.75
CCDC88B-209ENST00000494080 GPR98Q8WXG9 6306 aa4.04□□□□□ -1.76
CCDC88B-209ENST00000494080 NEBP20929 6669 aa4.01□□□□□ -1.77
CCDC88B-209ENST00000494080 KRTAP4-6Q9BYQ5 205 aa3.95□□□□□ -1.78
CCDC88B-209ENST00000494080 KRTAP5-5Q701N2 237 aaPredicted RBP3.94□□□□□ -1.78
CCDC88B-209ENST00000494080 LCE1EQ5T753 118 aa3.88□□□□□ -1.79
CCDC88B-209ENST00000494080 KRTAP20-2Q3LI61 65 aa3.78□□□□□ -1.8
CCDC88B-209ENST00000494080 LCE1CQ5T751 118 aa3.75□□□□□ -1.81
CCDC88B-209ENST00000494080 LCE1FQ5T754 118 aa3.75□□□□□ -1.81
CCDC88B-209ENST00000494080 KRTAP4-11Q9BYQ6 195 aa3.68□□□□□ -1.82
CCDC88B-209ENST00000494080 MUC5ACP98088 5654 aa3.52□□□□□ -1.85
CCDC88B-209ENST00000494080 KRTAP9-9Q9BYP9 154 aa3.51□□□□□ -1.85
CCDC88B-209ENST00000494080 HMCN1Q96RW7 5635 aa3.46□□□□□ -1.85
CCDC88B-209ENST00000494080 KRTAP5-4Q6L8H1 288 aa3.45□□□□□ -1.86
CCDC88B-209ENST00000494080 KRTAP4-4Q9BYR3 166 aa3.34□□□□□ -1.87
CCDC88B-209ENST00000494080 KRTAP4-12Q9BQ66 201 aa3.27□□□□□ -1.89
CCDC88B-209ENST00000494080 KRTAP4-2Q9BYR5 136 aa3.27□□□□□ -1.89
CCDC88B-209ENST00000494080 AHNAK2Q8IVF2 5795 aa3.14□□□□□ -1.91
CCDC88B-209ENST00000494080 KRTAP5-3Q6L8H2 238 aa3.1□□□□□ -1.91
CCDC88B-209ENST00000494080 KRTAP5-2Q701N4 177 aa3.06□□□□□ -1.92
CCDC88B-209ENST00000494080 KRTAP5-10Q6L8G5 202 aa2.96□□□□□ -1.94
CCDC88B-209ENST00000494080 KRTAP5-8O75690 187 aa2.9□□□□□ -1.95
CCDC88B-209ENST00000494080 KRTAP5-1Q6L8H4 278 aa2.72□□□□□ -1.97
CCDC88B-209ENST00000494080 MUC5BQ9HC84 5762 aaPredicted RBP2.62□□□□□ -1.99
CCDC88B-209ENST00000494080 AHNAKQ09666 5890 aaKnown RBP2.62□□□□□ -1.99
CCDC88B-209ENST00000494080 KRTAP21-2Q3LI59 83 aa2.57□□□□□ -2
CCDC88B-209ENST00000494080 KRTAP5-11Q6L8G4 156 aa2.54□□□□□ -2
CCDC88B-209ENST00000494080 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
CCDC88B-209ENST00000494080 KRTAP5-7Q6L8G8 165 aa2.43□□□□□ -2.02
CCDC88B-209ENST00000494080 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.39□□□□□ -2.03
CCDC88B-209ENST00000494080 PHGR1C9JFL3 82 aa2.36□□□□□ -2.03
CCDC88B-209ENST00000494080 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 11.5 ms