RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 RNF213Q63HN8 5207 aa3.48□□□□□ -1.85
SRGAP3-207ENST00000485983 FAT4Q6V0I7 4981 aa3.47□□□□□ -1.85
SRGAP3-207ENST00000485983 FLGP20930 4061 aaPredicted RBP3.42□□□□□ -1.86
SRGAP3-207ENST00000485983 MT1LQ93083 61 aa3.42□□□□□ -1.86
SRGAP3-207ENST00000485983 MUC17Q685J3 4493 aa3.41□□□□□ -1.86
SRGAP3-207ENST00000485983 SYNE2Q8WXH0 6885 aaKnown RBP3.41□□□□□ -1.86
SRGAP3-207ENST00000485983 KRTAP9-7A8MTY7 169 aa3.39□□□□□ -1.87
SRGAP3-207ENST00000485983 KRTAP20-1Q3LI63 56 aa3.38□□□□□ -1.87
SRGAP3-207ENST00000485983 KRTAP4-7Q9BYR0 210 aa3.37□□□□□ -1.87
SRGAP3-207ENST00000485983 HMCN2Q8NDA2 5059 aa3.36□□□□□ -1.87
SRGAP3-207ENST00000485983 MT1EP04732 61 aa3.36□□□□□ -1.87
SRGAP3-207ENST00000485983 LCE1BQ5T7P3 118 aa3.31□□□□□ -1.88
SRGAP3-207ENST00000485983 MT1MQ8N339 61 aa3.29□□□□□ -1.88
SRGAP3-207ENST00000485983 KRTAP19-6Q3LI70 58 aa3.28□□□□□ -1.88
SRGAP3-207ENST00000485983 LCE1DQ5T752 114 aa3.28□□□□□ -1.88
SRGAP3-207ENST00000485983 LCE2AQ5TA79 106 aaPredicted RBP3.25□□□□□ -1.89
SRGAP3-207ENST00000485983 SYNE1Q8NF91 8797 aaKnown RBP3.25□□□□□ -1.89
SRGAP3-207ENST00000485983 LOC100996750A0A140TA64 210 aa3.19□□□□□ -1.9
SRGAP3-207ENST00000485983 KRTAP4-9Q9BYQ8 210 aa3.19□□□□□ -1.9
SRGAP3-207ENST00000485983 PRM1P04553 51 aa3.17□□□□□ -1.9
SRGAP3-207ENST00000485983 KRTAP4-3Q9BYR4 195 aa3.16□□□□□ -1.9
SRGAP3-207ENST00000485983 LCE5AQ5TCM9 118 aa3.14□□□□□ -1.91
SRGAP3-207ENST00000485983 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.13□□□□□ -1.91
SRGAP3-207ENST00000485983 MT1AP04731 61 aa3.1□□□□□ -1.91
SRGAP3-207ENST00000485983 KRTAP2-3P0C7H8 128 aa3.08□□□□□ -1.92
SRGAP3-207ENST00000485983 KRTAP2-4Q9BYR9 128 aa3.08□□□□□ -1.92
SRGAP3-207ENST00000485983 USH2AO75445 5202 aa3.05□□□□□ -1.92
SRGAP3-207ENST00000485983 KRTAP6-3Q3LI67 103 aa3.02□□□□□ -1.93
SRGAP3-207ENST00000485983 LCE1AQ5T7P2 110 aa3.01□□□□□ -1.93
SRGAP3-207ENST00000485983 KRTAP19-7Q3SYF9 63 aa2.98□□□□□ -1.93
SRGAP3-207ENST00000485983 KRTAP2-1Q9BYU5 128 aa2.98□□□□□ -1.93
SRGAP3-207ENST00000485983 KMT2DO14686 5537 aa2.98□□□□□ -1.93
SRGAP3-207ENST00000485983 MACF1Q9UPN3 7388 aaKnown RBP2.97□□□□□ -1.93
SRGAP3-207ENST00000485983 KRTAP2-2Q9BYT5 123 aa2.96□□□□□ -1.94
SRGAP3-207ENST00000485983 LCE1CQ5T751 118 aa2.95□□□□□ -1.94
SRGAP3-207ENST00000485983 LCE1EQ5T753 118 aa2.95□□□□□ -1.94
SRGAP3-207ENST00000485983 LCE1FQ5T754 118 aa2.95□□□□□ -1.94
SRGAP3-207ENST00000485983 LCE4AQ5TA78 99 aa2.94□□□□□ -1.94
SRGAP3-207ENST00000485983 OBSCNQ5VST9 7968 aa2.9□□□□□ -1.94
SRGAP3-207ENST00000485983 DSTQ03001 7570 aaKnown RBP2.89□□□□□ -1.95
SRGAP3-207ENST00000485983 FCGBPQ9Y6R7 5405 aaPredicted RBP2.89□□□□□ -1.95
SRGAP3-207ENST00000485983 KRTAP6-2Q3LI66 62 aa2.87□□□□□ -1.95
SRGAP3-207ENST00000485983 KRTAP9-4Q9BYQ2 154 aa2.84□□□□□ -1.95
SRGAP3-207ENST00000485983 KRTAP6-1Q3LI64 71 aa2.82□□□□□ -1.96
SRGAP3-207ENST00000485983 KRTAP9-6A8MVA2 160 aa2.77□□□□□ -1.97
SRGAP3-207ENST00000485983 NEBP20929 6669 aa2.77□□□□□ -1.97
SRGAP3-207ENST00000485983 MUC12Q9UKN1 5478 aa2.73□□□□□ -1.97
SRGAP3-207ENST00000485983 SSPOA2VEC9 5147 aa2.73□□□□□ -1.97
SRGAP3-207ENST00000485983 GPR98Q8WXG9 6306 aa2.73□□□□□ -1.97
SRGAP3-207ENST00000485983 KRTAP9-9Q9BYP9 154 aa2.7□□□□□ -1.98
SRGAP3-207ENST00000485983 MDN1Q9NU22 5596 aa2.57□□□□□ -2
SRGAP3-207ENST00000485983 KRTAP4-6Q9BYQ5 205 aa2.5□□□□□ -2.01
SRGAP3-207ENST00000485983 KRTAP5-9P26371 169 aa2.45□□□□□ -2.02
SRGAP3-207ENST00000485983 KRTAP4-12Q9BQ66 201 aa2.42□□□□□ -2.02
SRGAP3-207ENST00000485983 KRTAP4-2Q9BYR5 136 aa2.42□□□□□ -2.02
SRGAP3-207ENST00000485983 MUC19Q7Z5P9 8384 aa2.39□□□□□ -2.03
SRGAP3-207ENST00000485983 KRTAP20-2Q3LI61 65 aa2.34□□□□□ -2.03
SRGAP3-207ENST00000485983 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
SRGAP3-207ENST00000485983 KRTAP4-11Q9BYQ6 195 aa2.32□□□□□ -2.04
SRGAP3-207ENST00000485983 KRTAP5-4Q6L8H1 288 aa2.17□□□□□ -2.06
SRGAP3-207ENST00000485983 KRTAP5-5Q701N2 237 aaPredicted RBP2.1□□□□□ -2.07
SRGAP3-207ENST00000485983 KRTAP5-3Q6L8H2 238 aa2.06□□□□□ -2.08
SRGAP3-207ENST00000485983 MUC5ACP98088 5654 aa2.04□□□□□ -2.08
SRGAP3-207ENST00000485983 AHNAK2Q8IVF2 5795 aa1.97□□□□□ -2.09
SRGAP3-207ENST00000485983 HMCN1Q96RW7 5635 aa1.94□□□□□ -2.1
SRGAP3-207ENST00000485983 PHGR1C9JFL3 82 aa1.91□□□□□ -2.1
SRGAP3-207ENST00000485983 KRTAP5-8O75690 187 aa1.89□□□□□ -2.11
SRGAP3-207ENST00000485983 AHNAKQ09666 5890 aaKnown RBP1.7□□□□□ -2.14
SRGAP3-207ENST00000485983 KRTAP5-2Q701N4 177 aa1.68□□□□□ -2.14
SRGAP3-207ENST00000485983 MUC5BQ9HC84 5762 aaPredicted RBP1.62□□□□□ -2.15
SRGAP3-207ENST00000485983 KRTAP5-10Q6L8G5 202 aa1.61□□□□□ -2.15
SRGAP3-207ENST00000485983 KRTAP5-1Q6L8H4 278 aa1.55□□□□□ -2.16
SRGAP3-207ENST00000485983 KRTAP5-11Q6L8G4 156 aa1.49□□□□□ -2.17
SRGAP3-207ENST00000485983 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.47□□□□□ -2.17
SRGAP3-207ENST00000485983 KRTAP5-7Q6L8G8 165 aa1.47□□□□□ -2.17
SRGAP3-207ENST00000485983 KRTAP21-2Q3LI59 83 aa1.41□□□□□ -2.18
SRGAP3-207ENST00000485983 KRTAP21-1Q3LI58 79 aa1.29□□□□□ -2.2
SRGAP3-207ENST00000485983 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 74.9 ms