RNA–Protein interactions for RNA: ENST00000483888.6

COL12A1-207, Transcript of collagen type XII alpha 1 chain, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene COL12A1, Length 9,637 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-207ENST00000483888 LCE2AQ5TA79 106 aaPredicted RBP2.76□□□□□ -1.97
COL12A1-207ENST00000483888 KRTAP19-7Q3SYF9 63 aa2.73□□□□□ -1.97
COL12A1-207ENST00000483888 KRTAP19-2Q3LHN2 52 aa2.73□□□□□ -1.97
COL12A1-207ENST00000483888 KRTAP2-2Q9BYT5 123 aa2.72□□□□□ -1.97
COL12A1-207ENST00000483888 DNHD1Q96M86 4753 aa2.71□□□□□ -1.97
COL12A1-207ENST00000483888 RYR1P21817 5038 aa2.7□□□□□ -1.98
COL12A1-207ENST00000483888 KMT2CQ8NEZ4 4911 aaKnown RBP2.68□□□□□ -1.98
COL12A1-207ENST00000483888 KRTAP6-1Q3LI64 71 aa2.64□□□□□ -1.99
COL12A1-207ENST00000483888 LCE5AQ5TCM9 118 aa2.64□□□□□ -1.99
COL12A1-207ENST00000483888 SYNE1Q8NF91 8797 aaKnown RBP2.6□□□□□ -1.99
COL12A1-207ENST00000483888 SYNE2Q8WXH0 6885 aaKnown RBP2.6□□□□□ -1.99
COL12A1-207ENST00000483888 LCE1AQ5T7P2 110 aa2.59□□□□□ -1.99
COL12A1-207ENST00000483888 LCE4AQ5TA78 99 aa2.58□□□□□ -2
COL12A1-207ENST00000483888 KRTAP9-6A0A140TA67 174 aa2.57□□□□□ -2
COL12A1-207ENST00000483888 RYR3Q15413 4870 aa2.56□□□□□ -2
COL12A1-207ENST00000483888 KRTAP9-4Q9BYQ2 154 aa2.55□□□□□ -2
COL12A1-207ENST00000483888 LCE1EQ5T753 118 aa2.53□□□□□ -2
COL12A1-207ENST00000483888 KRTAP19-6Q3LI70 58 aa2.52□□□□□ -2.01
COL12A1-207ENST00000483888 KRTAP4-11Q9BYQ6 195 aa2.5□□□□□ -2.01
COL12A1-207ENST00000483888 HERC2O95714 4834 aa2.47□□□□□ -2.01
COL12A1-207ENST00000483888 LCE1CQ5T751 118 aa2.46□□□□□ -2.02
COL12A1-207ENST00000483888 LCE1FQ5T754 118 aa2.46□□□□□ -2.02
COL12A1-207ENST00000483888 HYDINQ4G0P3 5121 aa2.45□□□□□ -2.02
COL12A1-207ENST00000483888 HMCN2Q8NDA2 5059 aa2.42□□□□□ -2.02
COL12A1-207ENST00000483888 BIRC6Q9NR09 4857 aa2.42□□□□□ -2.02
COL12A1-207ENST00000483888 KRTAP6-3Q3LI67 103 aa2.33□□□□□ -2.04
COL12A1-207ENST00000483888 RYR2Q92736 4967 aa2.3□□□□□ -2.04
COL12A1-207ENST00000483888 OBSCNQ5VST9 7968 aa2.23□□□□□ -2.05
COL12A1-207ENST00000483888 KRTAP5-5Q701N2 237 aaPredicted RBP2.21□□□□□ -2.05
COL12A1-207ENST00000483888 HERC1Q15751 4861 aa2.21□□□□□ -2.06
COL12A1-207ENST00000483888 KMT2DO14686 5537 aa2.11□□□□□ -2.07
COL12A1-207ENST00000483888 PCLOQ9Y6V0 5065 aa2.1□□□□□ -2.07
COL12A1-207ENST00000483888 KIAA1109Q2LD37 5005 aa2.08□□□□□ -2.08
COL12A1-207ENST00000483888 KRTAP20-2Q3LI61 65 aa2.08□□□□□ -2.08
COL12A1-207ENST00000483888 KRTAP4-4Q9BYR3 166 aa2.07□□□□□ -2.08
COL12A1-207ENST00000483888 KRTAP20-1Q3LI63 56 aa2.04□□□□□ -2.08
COL12A1-207ENST00000483888 DSTQ03001 7570 aaKnown RBP2.03□□□□□ -2.09
COL12A1-207ENST00000483888 UBR4Q5T4S7 5183 aa2□□□□□ -2.09
COL12A1-207ENST00000483888 KRTAP9-9Q9BYP9 154 aa1.99□□□□□ -2.09
COL12A1-207ENST00000483888 FCGBPQ9Y6R7 5405 aaPredicted RBP1.98□□□□□ -2.09
COL12A1-207ENST00000483888 FSIP2Q5CZC0 6907 aa1.97□□□□□ -2.09
COL12A1-207ENST00000483888 MUC2Q02817 5179 aa1.96□□□□□ -2.1
COL12A1-207ENST00000483888 EPPK1P58107 5090 aaKnown RBP1.9□□□□□ -2.11
COL12A1-207ENST00000483888 KRTAP4-6Q9BYQ5 205 aa1.89□□□□□ -2.11
COL12A1-207ENST00000483888 FAT4Q6V0I7 4981 aa1.88□□□□□ -2.11
COL12A1-207ENST00000483888 KRTAP4-12Q9BQ66 201 aa1.86□□□□□ -2.11
COL12A1-207ENST00000483888 KRTAP4-2Q9BYR5 136 aa1.86□□□□□ -2.11
COL12A1-207ENST00000483888 MUC19Q7Z5P9 8384 aa1.83□□□□□ -2.12
COL12A1-207ENST00000483888 RNF213Q63HN8 5207 aa1.83□□□□□ -2.12
COL12A1-207ENST00000483888 ABCA13Q86UQ4 5058 aa1.8□□□□□ -2.12
COL12A1-207ENST00000483888 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.79□□□□□ -2.12
COL12A1-207ENST00000483888 SSPOA2VEC9 5147 aa1.78□□□□□ -2.13
COL12A1-207ENST00000483888 MACF1Q9UPN3 7388 aaKnown RBP1.73□□□□□ -2.13
COL12A1-207ENST00000483888 USH2AO75445 5202 aa1.67□□□□□ -2.14
COL12A1-207ENST00000483888 KRTAP5-9P26371 169 aa1.67□□□□□ -2.14
COL12A1-207ENST00000483888 KRTAP5-4Q6L8H1 288 aa1.65□□□□□ -2.14
COL12A1-207ENST00000483888 KRTAP5-10Q6L8G5 202 aa1.63□□□□□ -2.15
COL12A1-207ENST00000483888 KRTAP5-2Q701N4 177 aa1.63□□□□□ -2.15
COL12A1-207ENST00000483888 MUC12Q9UKN1 5478 aa1.62□□□□□ -2.15
COL12A1-207ENST00000483888 MDN1Q9NU22 5596 aa1.58□□□□□ -2.16
COL12A1-207ENST00000483888 NEBP20929 6669 aa1.46□□□□□ -2.18
COL12A1-207ENST00000483888 KRTAP21-1Q3LI58 79 aa1.46□□□□□ -2.18
COL12A1-207ENST00000483888 KRTAP5-3Q6L8H2 238 aa1.38□□□□□ -2.19
COL12A1-207ENST00000483888 KRTAP5-1Q6L8H4 278 aa1.36□□□□□ -2.19
COL12A1-207ENST00000483888 KRTAP5-8O75690 187 aa1.32□□□□□ -2.2
COL12A1-207ENST00000483888 MUC5ACP98088 5654 aa1.32□□□□□ -2.2
COL12A1-207ENST00000483888 GPR98Q8WXG9 6306 aa1.27□□□□□ -2.21
COL12A1-207ENST00000483888 KRTAP21-2Q3LI59 83 aa1.26□□□□□ -2.21
COL12A1-207ENST00000483888 HMCN1Q96RW7 5635 aa1.23□□□□□ -2.21
COL12A1-207ENST00000483888 MUC5BQ9HC84 5762 aaPredicted RBP1.21□□□□□ -2.22
COL12A1-207ENST00000483888 KRTAP5-11Q6L8G4 156 aa1.2□□□□□ -2.22
COL12A1-207ENST00000483888 PHGR1C9JFL3 82 aa1.2□□□□□ -2.22
COL12A1-207ENST00000483888 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
COL12A1-207ENST00000483888 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.04□□□□□ -2.24
COL12A1-207ENST00000483888 AHNAK2Q8IVF2 5795 aa1.03□□□□□ -2.24
COL12A1-207ENST00000483888 KRTAP5-7Q6L8G8 165 aa0.94□□□□□ -2.26
COL12A1-207ENST00000483888 AHNAKQ09666 5890 aaKnown RBP0.9□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 224.5 ms