RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 KRTAP4-7Q9BYR0 210 aa2.71□□□□□ -1.98
COL6A3-210ENST00000473258 MT4P47944 62 aa2.7□□□□□ -1.98
COL6A3-210ENST00000473258 OBSCNQ5VST9 7968 aa2.7□□□□□ -1.98
COL6A3-210ENST00000473258 MT1BP07438 61 aa2.7□□□□□ -1.98
COL6A3-210ENST00000473258 KRTAP4-8A0A0G2JLE6 195 aa2.7□□□□□ -1.98
COL6A3-210ENST00000473258 KRTAP4-8Q9BYQ9 185 aa2.7□□□□□ -1.98
COL6A3-210ENST00000473258 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.69□□□□□ -1.98
COL6A3-210ENST00000473258 LOC100996750A0A140TA64 210 aa2.69□□□□□ -1.98
COL6A3-210ENST00000473258 KRTAP4-6Q9BYQ5 205 aa2.69□□□□□ -1.98
COL6A3-210ENST00000473258 MUC17Q685J3 4493 aa2.69□□□□□ -1.98
COL6A3-210ENST00000473258 LCE4AQ5TA78 99 aa2.67□□□□□ -1.98
COL6A3-210ENST00000473258 MUC2Q02817 5179 aa2.67□□□□□ -1.98
COL6A3-210ENST00000473258 LCE2AQ5TA79 106 aaPredicted RBP2.64□□□□□ -1.99
COL6A3-210ENST00000473258 LCE1AQ5T7P2 110 aa2.61□□□□□ -1.99
COL6A3-210ENST00000473258 KRTAP19-6Q3LI70 58 aa2.6□□□□□ -1.99
COL6A3-210ENST00000473258 KRTAP19-3Q7Z4W3 81 aa2.6□□□□□ -1.99
COL6A3-210ENST00000473258 UBR4Q5T4S7 5183 aa2.6□□□□□ -1.99
COL6A3-210ENST00000473258 MT1EP04732 61 aa2.58□□□□□ -2
COL6A3-210ENST00000473258 KRTAP9-9Q9BYP9 154 aa2.55□□□□□ -2
COL6A3-210ENST00000473258 LCE5AQ5TCM9 118 aa2.54□□□□□ -2
COL6A3-210ENST00000473258 KRTAP6-2Q3LI66 62 aa2.53□□□□□ -2
COL6A3-210ENST00000473258 GPR98Q8WXG9 6306 aa2.53□□□□□ -2.01
COL6A3-210ENST00000473258 KRTAP4-9Q9BYQ8 210 aa2.52□□□□□ -2.01
COL6A3-210ENST00000473258 LCE1BQ5T7P3 118 aa2.51□□□□□ -2.01
COL6A3-210ENST00000473258 HMCN2Q8NDA2 5059 aa2.5□□□□□ -2.01
COL6A3-210ENST00000473258 MT1MQ8N339 61 aa2.5□□□□□ -2.01
COL6A3-210ENST00000473258 MT1AP04731 61 aa2.49□□□□□ -2.01
COL6A3-210ENST00000473258 RNF213Q63HN8 5207 aa2.48□□□□□ -2.01
COL6A3-210ENST00000473258 KRTAP9-8Q9BYQ0 159 aa2.47□□□□□ -2.01
COL6A3-210ENST00000473258 LCE1DQ5T752 114 aa2.47□□□□□ -2.01
COL6A3-210ENST00000473258 KRTAP19-2Q3LHN2 52 aa2.45□□□□□ -2.02
COL6A3-210ENST00000473258 LCE1CQ5T751 118 aa2.44□□□□□ -2.02
COL6A3-210ENST00000473258 LCE1EQ5T753 118 aa2.44□□□□□ -2.02
COL6A3-210ENST00000473258 LCE1FQ5T754 118 aa2.44□□□□□ -2.02
COL6A3-210ENST00000473258 KRTAP9-3Q9BYQ3 159 aa2.43□□□□□ -2.02
COL6A3-210ENST00000473258 SYNE2Q8WXH0 6885 aaKnown RBP2.42□□□□□ -2.02
COL6A3-210ENST00000473258 FAT4Q6V0I7 4981 aa2.41□□□□□ -2.02
COL6A3-210ENST00000473258 KRTAP4-3Q9BYR4 195 aa2.4□□□□□ -2.02
COL6A3-210ENST00000473258 KRTAP9-6A8MVA2 160 aa2.36□□□□□ -2.03
COL6A3-210ENST00000473258 MUC19Q7Z5P9 8384 aa2.35□□□□□ -2.03
COL6A3-210ENST00000473258 NEBP20929 6669 aa2.34□□□□□ -2.03
COL6A3-210ENST00000473258 KRTAP19-7Q3SYF9 63 aa2.32□□□□□ -2.04
COL6A3-210ENST00000473258 FSIP2Q5CZC0 6907 aa2.29□□□□□ -2.04
COL6A3-210ENST00000473258 KMT2DO14686 5537 aa2.23□□□□□ -2.05
COL6A3-210ENST00000473258 MACF1Q9UPN3 7388 aaKnown RBP2.23□□□□□ -2.05
COL6A3-210ENST00000473258 KRTAP6-1Q3LI64 71 aa2.22□□□□□ -2.05
COL6A3-210ENST00000473258 USH2AO75445 5202 aa2.19□□□□□ -2.06
COL6A3-210ENST00000473258 KRTAP4-11Q9BYQ6 195 aa2.17□□□□□ -2.06
COL6A3-210ENST00000473258 KRTAP9-4Q9BYQ2 154 aa2.16□□□□□ -2.06
COL6A3-210ENST00000473258 SSPOA2VEC9 5147 aa2.14□□□□□ -2.07
COL6A3-210ENST00000473258 KRTAP4-2Q9BYR5 136 aa2.07□□□□□ -2.08
COL6A3-210ENST00000473258 KRTAP5-9P26371 169 aa2.06□□□□□ -2.08
COL6A3-210ENST00000473258 KRTAP5-3Q6L8H2 238 aa2.05□□□□□ -2.08
COL6A3-210ENST00000473258 KRTAP4-12Q9BQ66 201 aa2.02□□□□□ -2.09
COL6A3-210ENST00000473258 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.01□□□□□ -2.09
COL6A3-210ENST00000473258 FCGBPQ9Y6R7 5405 aaPredicted RBP1.99□□□□□ -2.09
COL6A3-210ENST00000473258 DSTQ03001 7570 aaKnown RBP1.97□□□□□ -2.09
COL6A3-210ENST00000473258 MUC12Q9UKN1 5478 aa1.96□□□□□ -2.1
COL6A3-210ENST00000473258 AHNAK2Q8IVF2 5795 aa1.94□□□□□ -2.1
COL6A3-210ENST00000473258 HMCN1Q96RW7 5635 aa1.89□□□□□ -2.11
COL6A3-210ENST00000473258 KRTAP5-5Q701N2 237 aaPredicted RBP1.89□□□□□ -2.11
COL6A3-210ENST00000473258 MDN1Q9NU22 5596 aa1.88□□□□□ -2.11
COL6A3-210ENST00000473258 KRTAP5-4Q6L8H1 288 aa1.85□□□□□ -2.11
COL6A3-210ENST00000473258 KRTAP20-2Q3LI61 65 aa1.8□□□□□ -2.12
COL6A3-210ENST00000473258 KRTAP5-2Q701N4 177 aa1.79□□□□□ -2.12
COL6A3-210ENST00000473258 AHNAKQ09666 5890 aaKnown RBP1.78□□□□□ -2.12
COL6A3-210ENST00000473258 KRTAP5-7Q6L8G8 165 aa1.77□□□□□ -2.13
COL6A3-210ENST00000473258 MUC5BQ9HC84 5762 aaPredicted RBP1.76□□□□□ -2.13
COL6A3-210ENST00000473258 KRTAP4-4Q9BYR3 166 aa1.72□□□□□ -2.13
COL6A3-210ENST00000473258 PHGR1C9JFL3 82 aa1.69□□□□□ -2.14
COL6A3-210ENST00000473258 MUC5ACP98088 5654 aa1.65□□□□□ -2.15
COL6A3-210ENST00000473258 KRTAP5-10Q6L8G5 202 aa1.65□□□□□ -2.15
COL6A3-210ENST00000473258 KRTAP5-8O75690 187 aa1.47□□□□□ -2.17
COL6A3-210ENST00000473258 KRTAP21-1Q3LI58 79 aa1.41□□□□□ -2.18
COL6A3-210ENST00000473258 KRTAP21-2Q3LI59 83 aa1.27□□□□□ -2.21
COL6A3-210ENST00000473258 KRTAP5-11Q6L8G4 156 aa1.25□□□□□ -2.21
COL6A3-210ENST00000473258 KRTAP5-1Q6L8H4 278 aa1.15□□□□□ -2.23
COL6A3-210ENST00000473258 MUC16Q8WXI7 14507 aa0.89□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 68.3 ms