RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 KRTAP20-1Q3LI63 56 aa4.07□□□□□ -1.76
USP40-208ENST00000450966 KRTAP6-3Q3LI67 103 aa4.07□□□□□ -1.76
USP40-208ENST00000450966 MT1MQ8N339 61 aa4.06□□□□□ -1.76
USP40-208ENST00000450966 EPPK1P58107 5090 aaKnown RBP4.06□□□□□ -1.76
USP40-208ENST00000450966 LCE1AQ5T7P2 110 aa4.03□□□□□ -1.76
USP40-208ENST00000450966 KRTAP9-7A8MTY7 169 aa4.01□□□□□ -1.77
USP40-208ENST00000450966 KRTAP4-7Q9BYR0 210 aa4.01□□□□□ -1.77
USP40-208ENST00000450966 ABCA13Q86UQ4 5058 aa4□□□□□ -1.77
USP40-208ENST00000450966 TNXBP22105 4242 aa3.99□□□□□ -1.77
USP40-208ENST00000450966 MT4P47944 62 aa3.97□□□□□ -1.77
USP40-208ENST00000450966 FLGP20930 4061 aaPredicted RBP3.97□□□□□ -1.77
USP40-208ENST00000450966 LPAP08519 4548 aa3.95□□□□□ -1.78
USP40-208ENST00000450966 UBR4Q5T4S7 5183 aa3.85□□□□□ -1.79
USP40-208ENST00000450966 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.85□□□□□ -1.79
USP40-208ENST00000450966 MT1AP04731 61 aa3.85□□□□□ -1.79
USP40-208ENST00000450966 LCE1BQ5T7P3 118 aa3.85□□□□□ -1.79
USP40-208ENST00000450966 LCE4AQ5TA78 99 aa3.85□□□□□ -1.79
USP40-208ENST00000450966 LCE1DQ5T752 114 aa3.83□□□□□ -1.8
USP40-208ENST00000450966 RNF213Q63HN8 5207 aa3.8□□□□□ -1.8
USP40-208ENST00000450966 KRTAP2-2Q9BYT5 123 aa3.8□□□□□ -1.8
USP40-208ENST00000450966 KRTAP19-7Q3SYF9 63 aa3.78□□□□□ -1.8
USP40-208ENST00000450966 LOC100996750A0A140TA64 210 aa3.77□□□□□ -1.81
USP40-208ENST00000450966 FAT4Q6V0I7 4981 aa3.75□□□□□ -1.81
USP40-208ENST00000450966 KRTAP4-3Q9BYR4 195 aa3.75□□□□□ -1.81
USP40-208ENST00000450966 SYNE1Q8NF91 8797 aaKnown RBP3.72□□□□□ -1.81
USP40-208ENST00000450966 KRTAP6-2Q3LI66 62 aa3.69□□□□□ -1.82
USP40-208ENST00000450966 KRTAP4-9Q9BYQ8 210 aa3.66□□□□□ -1.82
USP40-208ENST00000450966 HMCN2Q8NDA2 5059 aa3.64□□□□□ -1.83
USP40-208ENST00000450966 KRTAP9-6A8MVA2 160 aa3.64□□□□□ -1.83
USP40-208ENST00000450966 LCE5AQ5TCM9 118 aa3.64□□□□□ -1.83
USP40-208ENST00000450966 SYNE2Q8WXH0 6885 aaKnown RBP3.58□□□□□ -1.84
USP40-208ENST00000450966 FSIP2Q5CZC0 6907 aa3.55□□□□□ -1.84
USP40-208ENST00000450966 KRTAP9-4Q9BYQ2 154 aa3.53□□□□□ -1.84
USP40-208ENST00000450966 KRTAP6-1Q3LI64 71 aa3.41□□□□□ -1.86
USP40-208ENST00000450966 MUC2Q02817 5179 aa3.4□□□□□ -1.86
USP40-208ENST00000450966 KRTAP5-9P26371 169 aa3.4□□□□□ -1.87
USP40-208ENST00000450966 GPR98Q8WXG9 6306 aa3.39□□□□□ -1.87
USP40-208ENST00000450966 OBSCNQ5VST9 7968 aa3.36□□□□□ -1.87
USP40-208ENST00000450966 LCE1CQ5T751 118 aa3.34□□□□□ -1.87
USP40-208ENST00000450966 LCE1EQ5T753 118 aa3.34□□□□□ -1.87
USP40-208ENST00000450966 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
USP40-208ENST00000450966 MACF1Q9UPN3 7388 aaKnown RBP3.33□□□□□ -1.88
USP40-208ENST00000450966 KRTAP9-9Q9BYP9 154 aa3.28□□□□□ -1.88
USP40-208ENST00000450966 NEBP20929 6669 aa3.22□□□□□ -1.89
USP40-208ENST00000450966 USH2AO75445 5202 aa3.15□□□□□ -1.9
USP40-208ENST00000450966 SSPOA2VEC9 5147 aa3.14□□□□□ -1.91
USP40-208ENST00000450966 KRTAP4-11Q9BYQ6 195 aa3.08□□□□□ -1.92
USP40-208ENST00000450966 KRTAP20-2Q3LI61 65 aa3.04□□□□□ -1.92
USP40-208ENST00000450966 KMT2DO14686 5537 aa3.03□□□□□ -1.92
USP40-208ENST00000450966 KRTAP5-4Q6L8H1 288 aa3.01□□□□□ -1.93
USP40-208ENST00000450966 FCGBPQ9Y6R7 5405 aaPredicted RBP2.96□□□□□ -1.94
USP40-208ENST00000450966 KRTAP5-5Q701N2 237 aaPredicted RBP2.95□□□□□ -1.94
USP40-208ENST00000450966 KRTAP4-6Q9BYQ5 205 aa2.91□□□□□ -1.94
USP40-208ENST00000450966 MDN1Q9NU22 5596 aa2.9□□□□□ -1.94
USP40-208ENST00000450966 DSTQ03001 7570 aaKnown RBP2.88□□□□□ -1.95
USP40-208ENST00000450966 MUC12Q9UKN1 5478 aa2.74□□□□□ -1.97
USP40-208ENST00000450966 MUC19Q7Z5P9 8384 aa2.73□□□□□ -1.97
USP40-208ENST00000450966 AHNAK2Q8IVF2 5795 aa2.64□□□□□ -1.99
USP40-208ENST00000450966 KRTAP5-3Q6L8H2 238 aa2.62□□□□□ -1.99
USP40-208ENST00000450966 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -2
USP40-208ENST00000450966 KRTAP4-12Q9BQ66 201 aa2.58□□□□□ -2
USP40-208ENST00000450966 KRTAP4-2Q9BYR5 136 aa2.58□□□□□ -2
USP40-208ENST00000450966 HMCN1Q96RW7 5635 aa2.53□□□□□ -2
USP40-208ENST00000450966 MUC5ACP98088 5654 aa2.39□□□□□ -2.03
USP40-208ENST00000450966 KRTAP5-2Q701N4 177 aa2.29□□□□□ -2.04
USP40-208ENST00000450966 KRTAP5-8O75690 187 aa2.28□□□□□ -2.04
USP40-208ENST00000450966 AHNAKQ09666 5890 aaKnown RBP2.23□□□□□ -2.05
USP40-208ENST00000450966 KRTAP5-10Q6L8G5 202 aa2.2□□□□□ -2.06
USP40-208ENST00000450966 PHGR1C9JFL3 82 aa2.09□□□□□ -2.07
USP40-208ENST00000450966 KRTAP5-7Q6L8G8 165 aa2.08□□□□□ -2.08
USP40-208ENST00000450966 KRTAP5-11Q6L8G4 156 aa2.08□□□□□ -2.08
USP40-208ENST00000450966 MUC5BQ9HC84 5762 aaPredicted RBP2.06□□□□□ -2.08
USP40-208ENST00000450966 KRTAP21-1Q3LI58 79 aa2.06□□□□□ -2.08
USP40-208ENST00000450966 KRTAP5-1Q6L8H4 278 aa1.94□□□□□ -2.1
USP40-208ENST00000450966 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.87□□□□□ -2.11
USP40-208ENST00000450966 KRTAP21-2Q3LI59 83 aa1.76□□□□□ -2.13
USP40-208ENST00000450966 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 98.6 ms