RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 ABCA13Q86UQ4 5058 aa3.94□□□□□ -1.78
NEK1-201ENST00000439128 LCE3DQ9BYE3 92 aa3.93□□□□□ -1.78
NEK1-201ENST00000439128 MT1MQ8N339 61 aa3.88□□□□□ -1.79
NEK1-201ENST00000439128 FSIP2Q5CZC0 6907 aa3.84□□□□□ -1.79
NEK1-201ENST00000439128 FLGP20930 4061 aaPredicted RBP3.83□□□□□ -1.8
NEK1-201ENST00000439128 LCE3EQ5T5B0 92 aa3.82□□□□□ -1.8
NEK1-201ENST00000439128 MT3P25713 68 aa3.81□□□□□ -1.8
NEK1-201ENST00000439128 FAT4Q6V0I7 4981 aa3.79□□□□□ -1.8
NEK1-201ENST00000439128 UBR4Q5T4S7 5183 aa3.79□□□□□ -1.8
NEK1-201ENST00000439128 KRTAP4-3Q9BYR4 195 aa3.78□□□□□ -1.8
NEK1-201ENST00000439128 LCE1BQ5T7P3 118 aa3.78□□□□□ -1.8
NEK1-201ENST00000439128 SYNE2Q8WXH0 6885 aaKnown RBP3.77□□□□□ -1.81
NEK1-201ENST00000439128 LOC100996750A0A140TA64 210 aa3.76□□□□□ -1.81
NEK1-201ENST00000439128 KRTAP6-3Q3LI67 103 aa3.76□□□□□ -1.81
NEK1-201ENST00000439128 LCE1DQ5T752 114 aa3.76□□□□□ -1.81
NEK1-201ENST00000439128 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.76□□□□□ -1.81
NEK1-201ENST00000439128 RNF213Q63HN8 5207 aa3.75□□□□□ -1.81
NEK1-201ENST00000439128 KRTAP2-3P0C7H8 128 aa3.73□□□□□ -1.81
NEK1-201ENST00000439128 KRTAP2-4Q9BYR9 128 aa3.73□□□□□ -1.81
NEK1-201ENST00000439128 KRTAP4-9Q9BYQ8 210 aa3.62□□□□□ -1.83
NEK1-201ENST00000439128 LCE5AQ5TCM9 118 aa3.6□□□□□ -1.83
NEK1-201ENST00000439128 KRTAP2-2Q9BYT5 123 aa3.59□□□□□ -1.84
NEK1-201ENST00000439128 KRTAP2-1Q9BYU5 128 aa3.59□□□□□ -1.84
NEK1-201ENST00000439128 MUC2Q02817 5179 aa3.59□□□□□ -1.84
NEK1-201ENST00000439128 LCE1AQ5T7P2 110 aa3.57□□□□□ -1.84
NEK1-201ENST00000439128 KRTAP19-7Q3SYF9 63 aa3.57□□□□□ -1.84
NEK1-201ENST00000439128 HMCN2Q8NDA2 5059 aa3.56□□□□□ -1.84
NEK1-201ENST00000439128 MT1AP04731 61 aa3.55□□□□□ -1.84
NEK1-201ENST00000439128 LCE4AQ5TA78 99 aa3.5□□□□□ -1.85
NEK1-201ENST00000439128 PRM1P04553 51 aa3.44□□□□□ -1.86
NEK1-201ENST00000439128 SYNE1Q8NF91 8797 aaKnown RBP3.4□□□□□ -1.87
NEK1-201ENST00000439128 KRTAP6-2Q3LI66 62 aa3.38□□□□□ -1.87
NEK1-201ENST00000439128 KRTAP6-1Q3LI64 71 aa3.34□□□□□ -1.87
NEK1-201ENST00000439128 KRTAP9-4Q9BYQ2 154 aa3.32□□□□□ -1.88
NEK1-201ENST00000439128 LCE1CQ5T751 118 aa3.3□□□□□ -1.88
NEK1-201ENST00000439128 LCE1EQ5T753 118 aa3.3□□□□□ -1.88
NEK1-201ENST00000439128 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
NEK1-201ENST00000439128 OBSCNQ5VST9 7968 aa3.19□□□□□ -1.9
NEK1-201ENST00000439128 KRTAP9-9Q9BYP9 154 aa3.17□□□□□ -1.9
NEK1-201ENST00000439128 NEBP20929 6669 aa3.17□□□□□ -1.9
NEK1-201ENST00000439128 MACF1Q9UPN3 7388 aaKnown RBP3.09□□□□□ -1.92
NEK1-201ENST00000439128 KRTAP9-6A8MVA2 160 aa3.07□□□□□ -1.92
NEK1-201ENST00000439128 USH2AO75445 5202 aa3.07□□□□□ -1.92
NEK1-201ENST00000439128 KRTAP5-9P26371 169 aa3.05□□□□□ -1.92
NEK1-201ENST00000439128 SSPOA2VEC9 5147 aa3□□□□□ -1.93
NEK1-201ENST00000439128 KRTAP4-6Q9BYQ5 205 aa2.98□□□□□ -1.93
NEK1-201ENST00000439128 DSTQ03001 7570 aaKnown RBP2.96□□□□□ -1.94
NEK1-201ENST00000439128 KMT2DO14686 5537 aa2.93□□□□□ -1.94
NEK1-201ENST00000439128 FCGBPQ9Y6R7 5405 aaPredicted RBP2.91□□□□□ -1.94
NEK1-201ENST00000439128 KRTAP20-2Q3LI61 65 aa2.9□□□□□ -1.95
NEK1-201ENST00000439128 GPR98Q8WXG9 6306 aa2.75□□□□□ -1.97
NEK1-201ENST00000439128 MDN1Q9NU22 5596 aa2.73□□□□□ -1.97
NEK1-201ENST00000439128 KRTAP5-4Q6L8H1 288 aa2.72□□□□□ -1.97
NEK1-201ENST00000439128 KRTAP4-12Q9BQ66 201 aa2.7□□□□□ -1.98
NEK1-201ENST00000439128 KRTAP4-2Q9BYR5 136 aa2.7□□□□□ -1.98
NEK1-201ENST00000439128 MUC12Q9UKN1 5478 aa2.66□□□□□ -1.98
NEK1-201ENST00000439128 KRTAP4-11Q9BYQ6 195 aa2.65□□□□□ -1.99
NEK1-201ENST00000439128 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
NEK1-201ENST00000439128 KRTAP5-3Q6L8H2 238 aa2.49□□□□□ -2.01
NEK1-201ENST00000439128 MUC19Q7Z5P9 8384 aa2.43□□□□□ -2.02
NEK1-201ENST00000439128 KRTAP5-5Q701N2 237 aaPredicted RBP2.36□□□□□ -2.03
NEK1-201ENST00000439128 KRTAP5-8O75690 187 aa2.26□□□□□ -2.05
NEK1-201ENST00000439128 AHNAK2Q8IVF2 5795 aa2.25□□□□□ -2.05
NEK1-201ENST00000439128 MUC5ACP98088 5654 aa2.25□□□□□ -2.05
NEK1-201ENST00000439128 HMCN1Q96RW7 5635 aa2.16□□□□□ -2.06
NEK1-201ENST00000439128 PHGR1C9JFL3 82 aa2.15□□□□□ -2.07
NEK1-201ENST00000439128 KRTAP5-2Q701N4 177 aa1.97□□□□□ -2.09
NEK1-201ENST00000439128 MUC5BQ9HC84 5762 aaPredicted RBP1.9□□□□□ -2.1
NEK1-201ENST00000439128 AHNAKQ09666 5890 aaKnown RBP1.88□□□□□ -2.11
NEK1-201ENST00000439128 KRTAP5-10Q6L8G5 202 aa1.83□□□□□ -2.12
NEK1-201ENST00000439128 KRTAP5-11Q6L8G4 156 aa1.79□□□□□ -2.12
NEK1-201ENST00000439128 KRTAP5-1Q6L8H4 278 aa1.78□□□□□ -2.12
NEK1-201ENST00000439128 KRTAP5-7Q6L8G8 165 aa1.74□□□□□ -2.13
NEK1-201ENST00000439128 KRTAP21-2Q3LI59 83 aa1.62□□□□□ -2.15
NEK1-201ENST00000439128 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.47□□□□□ -2.17
NEK1-201ENST00000439128 KRTAP21-1Q3LI58 79 aa1.46□□□□□ -2.18
NEK1-201ENST00000439128 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 77.5 ms