RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 KRTAP9-2Q9BYQ4 174 aa2.83□□□□□ -1.96
TMEM39A-202ENST00000438581 KRTAP4-6Q9BYQ5 205 aa2.83□□□□□ -1.96
TMEM39A-202ENST00000438581 KRTAP4-7Q9BYR0 210 aa2.8□□□□□ -1.96
TMEM39A-202ENST00000438581 MT1GP13640 62 aa2.79□□□□□ -1.96
TMEM39A-202ENST00000438581 KRTAP19-6Q3LI70 58 aa2.79□□□□□ -1.96
TMEM39A-202ENST00000438581 LCE3BQ5TA77 95 aa2.79□□□□□ -1.96
TMEM39A-202ENST00000438581 USH2AO75445 5202 aa2.77□□□□□ -1.97
TMEM39A-202ENST00000438581 KRTAP9-6A0A140TA67 174 aa2.76□□□□□ -1.97
TMEM39A-202ENST00000438581 KRTAP9-7A8MTY7 169 aa2.76□□□□□ -1.97
TMEM39A-202ENST00000438581 MT1EP04732 61 aa2.75□□□□□ -1.97
TMEM39A-202ENST00000438581 KRTAP4-12Q9BQ66 201 aa2.75□□□□□ -1.97
TMEM39A-202ENST00000438581 LCE5AQ5TCM9 118 aa2.74□□□□□ -1.97
TMEM39A-202ENST00000438581 MT1LQ93083 61 aa2.74□□□□□ -1.97
TMEM39A-202ENST00000438581 SPRR2DP22532 72 aa2.73□□□□□ -1.97
TMEM39A-202ENST00000438581 KRTAP12-4P60329 112 aa2.73□□□□□ -1.97
TMEM39A-202ENST00000438581 KRTAP19-3Q7Z4W3 81 aa2.73□□□□□ -1.97
TMEM39A-202ENST00000438581 LCE4AQ5TA78 99 aa2.7□□□□□ -1.98
TMEM39A-202ENST00000438581 KRTAP9-4Q9BYQ2 154 aa2.68□□□□□ -1.98
TMEM39A-202ENST00000438581 KRTAP19-7Q3SYF9 63 aa2.68□□□□□ -1.98
TMEM39A-202ENST00000438581 KRTAP2-3P0C7H8 128 aa2.66□□□□□ -1.98
TMEM39A-202ENST00000438581 KRTAP2-4Q9BYR9 128 aa2.66□□□□□ -1.98
TMEM39A-202ENST00000438581 KRTAP2-1Q9BYU5 128 aa2.66□□□□□ -1.98
TMEM39A-202ENST00000438581 KRTAP4-3Q9BYR4 195 aa2.66□□□□□ -1.98
TMEM39A-202ENST00000438581 DSTQ03001 7570 aaKnown RBP2.66□□□□□ -1.98
TMEM39A-202ENST00000438581 MT1MQ8N339 61 aa2.64□□□□□ -1.99
TMEM39A-202ENST00000438581 KMT2DO14686 5537 aa2.63□□□□□ -1.99
TMEM39A-202ENST00000438581 FCGBPQ9Y6R7 5405 aaPredicted RBP2.62□□□□□ -1.99
TMEM39A-202ENST00000438581 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.59□□□□□ -2
TMEM39A-202ENST00000438581 SYNE2Q8WXH0 6885 aaKnown RBP2.58□□□□□ -2
TMEM39A-202ENST00000438581 LCE1DQ5T752 114 aa2.57□□□□□ -2
TMEM39A-202ENST00000438581 SSPOA2VEC9 5147 aa2.55□□□□□ -2
TMEM39A-202ENST00000438581 KRTAP6-3Q3LI67 103 aa2.53□□□□□ -2
TMEM39A-202ENST00000438581 LCE1AQ5T7P2 110 aa2.53□□□□□ -2
TMEM39A-202ENST00000438581 KRTAP9-9Q9BYP9 154 aa2.53□□□□□ -2
TMEM39A-202ENST00000438581 MUC12Q9UKN1 5478 aa2.5□□□□□ -2.01
TMEM39A-202ENST00000438581 MACF1Q9UPN3 7388 aaKnown RBP2.49□□□□□ -2.01
TMEM39A-202ENST00000438581 MT4P47944 62 aa2.47□□□□□ -2.01
TMEM39A-202ENST00000438581 LCE3DQ9BYE3 92 aa2.46□□□□□ -2.02
TMEM39A-202ENST00000438581 KRTAP9-6A8MVA2 160 aa2.46□□□□□ -2.02
TMEM39A-202ENST00000438581 LCE1FQ5T754 118 aa2.41□□□□□ -2.02
TMEM39A-202ENST00000438581 LCE3EQ5T5B0 92 aa2.4□□□□□ -2.03
TMEM39A-202ENST00000438581 KRTAP4-9Q9BYQ8 210 aa2.4□□□□□ -2.03
TMEM39A-202ENST00000438581 MT1AP04731 61 aa2.37□□□□□ -2.03
TMEM39A-202ENST00000438581 KRTAP4-11Q9BYQ6 195 aa2.35□□□□□ -2.03
TMEM39A-202ENST00000438581 KRTAP6-1Q3LI64 71 aa2.33□□□□□ -2.04
TMEM39A-202ENST00000438581 LCE1EQ5T753 118 aa2.33□□□□□ -2.04
TMEM39A-202ENST00000438581 PRM1P04553 51 aa2.31□□□□□ -2.04
TMEM39A-202ENST00000438581 KRTAP20-1Q3LI63 56 aa2.3□□□□□ -2.04
TMEM39A-202ENST00000438581 MDN1Q9NU22 5596 aa2.26□□□□□ -2.05
TMEM39A-202ENST00000438581 KRTAP5-9P26371 169 aa2.25□□□□□ -2.05
TMEM39A-202ENST00000438581 KRTAP6-2Q3LI66 62 aa2.24□□□□□ -2.05
TMEM39A-202ENST00000438581 LCE1BQ5T7P3 118 aa2.22□□□□□ -2.05
TMEM39A-202ENST00000438581 KRTAP4-2Q9BYR5 136 aa2.18□□□□□ -2.06
TMEM39A-202ENST00000438581 NEBP20929 6669 aa2.17□□□□□ -2.06
TMEM39A-202ENST00000438581 MUC19Q7Z5P9 8384 aa2.04□□□□□ -2.08
TMEM39A-202ENST00000438581 KRTAP20-2Q3LI61 65 aa1.98□□□□□ -2.09
TMEM39A-202ENST00000438581 KRTAP5-5Q701N2 237 aaPredicted RBP1.93□□□□□ -2.1
TMEM39A-202ENST00000438581 KRTAP5-3Q6L8H2 238 aa1.91□□□□□ -2.1
TMEM39A-202ENST00000438581 GPR98Q8WXG9 6306 aa1.91□□□□□ -2.1
TMEM39A-202ENST00000438581 HMCN1Q96RW7 5635 aa1.88□□□□□ -2.11
TMEM39A-202ENST00000438581 MUC5ACP98088 5654 aa1.83□□□□□ -2.12
TMEM39A-202ENST00000438581 KRTAP5-4Q6L8H1 288 aa1.82□□□□□ -2.12
TMEM39A-202ENST00000438581 LCE1CQ5T751 118 aa1.78□□□□□ -2.12
TMEM39A-202ENST00000438581 KRTAP4-4Q9BYR3 166 aa1.66□□□□□ -2.14
TMEM39A-202ENST00000438581 AHNAK2Q8IVF2 5795 aa1.63□□□□□ -2.15
TMEM39A-202ENST00000438581 KRTAP5-2Q701N4 177 aa1.6□□□□□ -2.15
TMEM39A-202ENST00000438581 MUC5BQ9HC84 5762 aaPredicted RBP1.6□□□□□ -2.15
TMEM39A-202ENST00000438581 KRTAP21-1Q3LI58 79 aa1.58□□□□□ -2.16
TMEM39A-202ENST00000438581 KRTAP5-8O75690 187 aa1.56□□□□□ -2.16
TMEM39A-202ENST00000438581 AHNAKQ09666 5890 aaKnown RBP1.54□□□□□ -2.16
TMEM39A-202ENST00000438581 KRTAP5-11Q6L8G4 156 aa1.51□□□□□ -2.17
TMEM39A-202ENST00000438581 KRTAP5-7Q6L8G8 165 aa1.45□□□□□ -2.18
TMEM39A-202ENST00000438581 KRTAP5-1Q6L8H4 278 aa1.43□□□□□ -2.18
TMEM39A-202ENST00000438581 KRTAP5-10Q6L8G5 202 aa1.42□□□□□ -2.18
TMEM39A-202ENST00000438581 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.33□□□□□ -2.2
TMEM39A-202ENST00000438581 KRTAP21-2Q3LI59 83 aa1.31□□□□□ -2.2
TMEM39A-202ENST00000438581 PHGR1C9JFL3 82 aa1.18□□□□□ -2.22
TMEM39A-202ENST00000438581 MUC16Q8WXI7 14507 aa0.78□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 11 ms