RNA–Protein interactions for RNA: ENST00000437951.5

PTCH1-209, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,049 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-209ENST00000437951 LOC100996750A0A140TA64 210 aa3.25□□□□□ -1.89
PTCH1-209ENST00000437951 RYR3Q15413 4870 aa3.23□□□□□ -1.89
PTCH1-209ENST00000437951 LRP2P98164 4655 aa3.23□□□□□ -1.89
PTCH1-209ENST00000437951 HERC1Q15751 4861 aa3.23□□□□□ -1.89
PTCH1-209ENST00000437951 RYR2Q92736 4967 aa3.22□□□□□ -1.89
PTCH1-209ENST00000437951 LCE1CQ5T751 118 aa3.21□□□□□ -1.9
PTCH1-209ENST00000437951 LCE1EQ5T753 118 aa3.21□□□□□ -1.9
PTCH1-209ENST00000437951 LCE1FQ5T754 118 aa3.21□□□□□ -1.9
PTCH1-209ENST00000437951 LCE1AQ5T7P2 110 aa3.21□□□□□ -1.9
PTCH1-209ENST00000437951 KRTAP4-3Q9BYR4 195 aa3.17□□□□□ -1.9
PTCH1-209ENST00000437951 KRTAP6-2Q3LI66 62 aa3.16□□□□□ -1.9
PTCH1-209ENST00000437951 KRTAP9-7A8MTY7 169 aa3.12□□□□□ -1.91
PTCH1-209ENST00000437951 MUC17Q685J3 4493 aa3.11□□□□□ -1.91
PTCH1-209ENST00000437951 KRTAP19-7Q3SYF9 63 aa3.1□□□□□ -1.91
PTCH1-209ENST00000437951 SYNE2Q8WXH0 6885 aaKnown RBP3.09□□□□□ -1.92
PTCH1-209ENST00000437951 LCE4AQ5TA78 99 aa3.08□□□□□ -1.92
PTCH1-209ENST00000437951 KRTAP4-9Q9BYQ8 210 aa3.03□□□□□ -1.92
PTCH1-209ENST00000437951 BIRC6Q9NR09 4857 aa3.03□□□□□ -1.92
PTCH1-209ENST00000437951 KRTAP9-4Q9BYQ2 154 aa3.02□□□□□ -1.93
PTCH1-209ENST00000437951 KRTAP6-3Q3LI67 103 aa2.97□□□□□ -1.93
PTCH1-209ENST00000437951 HERC2O95714 4834 aa2.96□□□□□ -1.94
PTCH1-209ENST00000437951 KRTAP2-2Q9BYT5 123 aa2.96□□□□□ -1.94
PTCH1-209ENST00000437951 KRTAP9-9Q9BYP9 154 aa2.95□□□□□ -1.94
PTCH1-209ENST00000437951 KMT2CQ8NEZ4 4911 aaKnown RBP2.93□□□□□ -1.94
PTCH1-209ENST00000437951 KRTAP6-1Q3LI64 71 aa2.91□□□□□ -1.94
PTCH1-209ENST00000437951 HYDINQ4G0P3 5121 aa2.88□□□□□ -1.95
PTCH1-209ENST00000437951 PCLOQ9Y6V0 5065 aa2.85□□□□□ -1.95
PTCH1-209ENST00000437951 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.85□□□□□ -1.95
PTCH1-209ENST00000437951 KIAA1109Q2LD37 5005 aa2.83□□□□□ -1.96
PTCH1-209ENST00000437951 KRTAP9-6A8MVA2 160 aa2.83□□□□□ -1.96
PTCH1-209ENST00000437951 HMCN2Q8NDA2 5059 aa2.72□□□□□ -1.97
PTCH1-209ENST00000437951 SYNE1Q8NF91 8797 aaKnown RBP2.66□□□□□ -1.98
PTCH1-209ENST00000437951 FSIP2Q5CZC0 6907 aa2.66□□□□□ -1.98
PTCH1-209ENST00000437951 ABCA13Q86UQ4 5058 aa2.61□□□□□ -1.99
PTCH1-209ENST00000437951 KRTAP4-11Q9BYQ6 195 aa2.59□□□□□ -2
PTCH1-209ENST00000437951 EPPK1P58107 5090 aaKnown RBP2.56□□□□□ -2
PTCH1-209ENST00000437951 RNF213Q63HN8 5207 aa2.54□□□□□ -2
PTCH1-209ENST00000437951 KRTAP20-2Q3LI61 65 aa2.52□□□□□ -2.01
PTCH1-209ENST00000437951 OBSCNQ5VST9 7968 aa2.47□□□□□ -2.01
PTCH1-209ENST00000437951 MUC2Q02817 5179 aa2.45□□□□□ -2.02
PTCH1-209ENST00000437951 KRTAP5-9P26371 169 aa2.43□□□□□ -2.02
PTCH1-209ENST00000437951 FAT4Q6V0I7 4981 aa2.42□□□□□ -2.02
PTCH1-209ENST00000437951 UBR4Q5T4S7 5183 aa2.37□□□□□ -2.03
PTCH1-209ENST00000437951 KRTAP4-6Q9BYQ5 205 aa2.35□□□□□ -2.03
PTCH1-209ENST00000437951 DSTQ03001 7570 aaKnown RBP2.3□□□□□ -2.04
PTCH1-209ENST00000437951 KRTAP4-4Q9BYR3 166 aa2.29□□□□□ -2.04
PTCH1-209ENST00000437951 KMT2DO14686 5537 aa2.26□□□□□ -2.05
PTCH1-209ENST00000437951 KRTAP4-12Q9BQ66 201 aa2.25□□□□□ -2.05
PTCH1-209ENST00000437951 KRTAP4-2Q9BYR5 136 aa2.25□□□□□ -2.05
PTCH1-209ENST00000437951 KRTAP5-5Q701N2 237 aaPredicted RBP2.25□□□□□ -2.05
PTCH1-209ENST00000437951 KRTAP5-4Q6L8H1 288 aa2.21□□□□□ -2.06
PTCH1-209ENST00000437951 FCGBPQ9Y6R7 5405 aaPredicted RBP2.17□□□□□ -2.06
PTCH1-209ENST00000437951 MACF1Q9UPN3 7388 aaKnown RBP2.17□□□□□ -2.06
PTCH1-209ENST00000437951 NEBP20929 6669 aa2.11□□□□□ -2.07
PTCH1-209ENST00000437951 USH2AO75445 5202 aa2.07□□□□□ -2.08
PTCH1-209ENST00000437951 MUC12Q9UKN1 5478 aa1.99□□□□□ -2.09
PTCH1-209ENST00000437951 MDN1Q9NU22 5596 aa1.98□□□□□ -2.09
PTCH1-209ENST00000437951 SSPOA2VEC9 5147 aa1.98□□□□□ -2.09
PTCH1-209ENST00000437951 MUC19Q7Z5P9 8384 aa1.96□□□□□ -2.1
PTCH1-209ENST00000437951 GPR98Q8WXG9 6306 aa1.93□□□□□ -2.1
PTCH1-209ENST00000437951 KRTAP5-3Q6L8H2 238 aa1.92□□□□□ -2.1
PTCH1-209ENST00000437951 PHGR1C9JFL3 82 aa1.9□□□□□ -2.1
PTCH1-209ENST00000437951 KRTAP5-10Q6L8G5 202 aa1.81□□□□□ -2.12
PTCH1-209ENST00000437951 MUC5ACP98088 5654 aa1.81□□□□□ -2.12
PTCH1-209ENST00000437951 KRTAP5-2Q701N4 177 aa1.75□□□□□ -2.13
PTCH1-209ENST00000437951 KRTAP5-8O75690 187 aa1.68□□□□□ -2.14
PTCH1-209ENST00000437951 AHNAK2Q8IVF2 5795 aa1.68□□□□□ -2.14
PTCH1-209ENST00000437951 KRTAP5-11Q6L8G4 156 aa1.67□□□□□ -2.14
PTCH1-209ENST00000437951 HMCN1Q96RW7 5635 aa1.65□□□□□ -2.15
PTCH1-209ENST00000437951 MUC5BQ9HC84 5762 aaPredicted RBP1.6□□□□□ -2.15
PTCH1-209ENST00000437951 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.58□□□□□ -2.16
PTCH1-209ENST00000437951 KRTAP21-1Q3LI58 79 aa1.58□□□□□ -2.16
PTCH1-209ENST00000437951 AHNAKQ09666 5890 aaKnown RBP1.52□□□□□ -2.17
PTCH1-209ENST00000437951 KRTAP5-1Q6L8H4 278 aa1.5□□□□□ -2.17
PTCH1-209ENST00000437951 KRTAP21-2Q3LI59 83 aa1.46□□□□□ -2.18
PTCH1-209ENST00000437951 KRTAP5-7Q6L8G8 165 aa1.37□□□□□ -2.19
PTCH1-209ENST00000437951 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 71.8 ms