RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 LOC100996750A0A140TA64 210 aa1.96□□□□□ -2.1
SCN1A-204ENST00000423058 LCE1CQ5T751 118 aa1.96□□□□□ -2.1
SCN1A-204ENST00000423058 LCE1EQ5T753 118 aa1.96□□□□□ -2.1
SCN1A-204ENST00000423058 LCE1FQ5T754 118 aa1.96□□□□□ -2.1
SCN1A-204ENST00000423058 LCE1AQ5T7P2 110 aa1.96□□□□□ -2.1
SCN1A-204ENST00000423058 LCE4AQ5TA78 99 aa1.96□□□□□ -2.1
SCN1A-204ENST00000423058 LPAP08519 4548 aa1.94□□□□□ -2.1
SCN1A-204ENST00000423058 HYDINQ4G0P3 5121 aa1.92□□□□□ -2.1
SCN1A-204ENST00000423058 KRTAP6-3Q3LI67 103 aa1.9□□□□□ -2.11
SCN1A-204ENST00000423058 KRTAP4-3Q9BYR4 195 aa1.9□□□□□ -2.11
SCN1A-204ENST00000423058 MUC17Q685J3 4493 aa1.88□□□□□ -2.11
SCN1A-204ENST00000423058 KRTAP2-2Q9BYT5 123 aa1.87□□□□□ -2.11
SCN1A-204ENST00000423058 BIRC6Q9NR09 4857 aa1.87□□□□□ -2.11
SCN1A-204ENST00000423058 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.87□□□□□ -2.11
SCN1A-204ENST00000423058 LCE2AQ5TA79 106 aaPredicted RBP1.85□□□□□ -2.11
SCN1A-204ENST00000423058 HERC2O95714 4834 aa1.85□□□□□ -2.11
SCN1A-204ENST00000423058 KRTAP19-2Q3LHN2 52 aa1.85□□□□□ -2.11
SCN1A-204ENST00000423058 KRTAP6-2Q3LI66 62 aa1.84□□□□□ -2.12
SCN1A-204ENST00000423058 KRTAP9-4Q9BYQ2 154 aa1.84□□□□□ -2.12
SCN1A-204ENST00000423058 RYR2Q92736 4967 aa1.84□□□□□ -2.12
SCN1A-204ENST00000423058 KRTAP9-9Q9BYP9 154 aa1.83□□□□□ -2.12
SCN1A-204ENST00000423058 KIAA1109Q2LD37 5005 aa1.81□□□□□ -2.12
SCN1A-204ENST00000423058 KRTAP19-7Q3SYF9 63 aa1.8□□□□□ -2.12
SCN1A-204ENST00000423058 KRTAP4-9Q9BYQ8 210 aa1.8□□□□□ -2.12
SCN1A-204ENST00000423058 UBR4Q5T4S7 5183 aa1.8□□□□□ -2.12
SCN1A-204ENST00000423058 SYNE2Q8WXH0 6885 aaKnown RBP1.79□□□□□ -2.12
SCN1A-204ENST00000423058 HERC1Q15751 4861 aa1.78□□□□□ -2.12
SCN1A-204ENST00000423058 ABCA13Q86UQ4 5058 aa1.77□□□□□ -2.13
SCN1A-204ENST00000423058 LRP2P98164 4655 aa1.77□□□□□ -2.13
SCN1A-204ENST00000423058 KRTAP6-1Q3LI64 71 aa1.76□□□□□ -2.13
SCN1A-204ENST00000423058 EPPK1P58107 5090 aaKnown RBP1.74□□□□□ -2.13
SCN1A-204ENST00000423058 RNF213Q63HN8 5207 aa1.68□□□□□ -2.14
SCN1A-204ENST00000423058 KMT2CQ8NEZ4 4911 aaKnown RBP1.67□□□□□ -2.14
SCN1A-204ENST00000423058 FSIP2Q5CZC0 6907 aa1.66□□□□□ -2.14
SCN1A-204ENST00000423058 SSPOA2VEC9 5147 aa1.59□□□□□ -2.15
SCN1A-204ENST00000423058 SYNE1Q8NF91 8797 aaKnown RBP1.57□□□□□ -2.16
SCN1A-204ENST00000423058 KRTAP9-6A8MVA2 160 aa1.55□□□□□ -2.16
SCN1A-204ENST00000423058 HMCN2Q8NDA2 5059 aa1.54□□□□□ -2.16
SCN1A-204ENST00000423058 MUC2Q02817 5179 aa1.54□□□□□ -2.16
SCN1A-204ENST00000423058 KRTAP20-2Q3LI61 65 aa1.54□□□□□ -2.16
SCN1A-204ENST00000423058 FAT4Q6V0I7 4981 aa1.54□□□□□ -2.16
SCN1A-204ENST00000423058 USH2AO75445 5202 aa1.5□□□□□ -2.17
SCN1A-204ENST00000423058 KRTAP4-11Q9BYQ6 195 aa1.5□□□□□ -2.17
SCN1A-204ENST00000423058 KRTAP5-9P26371 169 aa1.47□□□□□ -2.17
SCN1A-204ENST00000423058 KRTAP4-6Q9BYQ5 205 aa1.45□□□□□ -2.18
SCN1A-204ENST00000423058 OBSCNQ5VST9 7968 aa1.44□□□□□ -2.18
SCN1A-204ENST00000423058 MACF1Q9UPN3 7388 aaKnown RBP1.43□□□□□ -2.18
SCN1A-204ENST00000423058 NEBP20929 6669 aa1.42□□□□□ -2.18
SCN1A-204ENST00000423058 KRTAP5-4Q6L8H1 288 aa1.42□□□□□ -2.18
SCN1A-204ENST00000423058 KMT2DO14686 5537 aa1.41□□□□□ -2.18
SCN1A-204ENST00000423058 KRTAP4-4Q9BYR3 166 aa1.38□□□□□ -2.19
SCN1A-204ENST00000423058 KRTAP4-12Q9BQ66 201 aa1.37□□□□□ -2.19
SCN1A-204ENST00000423058 KRTAP4-2Q9BYR5 136 aa1.37□□□□□ -2.19
SCN1A-204ENST00000423058 KRTAP5-2Q701N4 177 aa1.36□□□□□ -2.19
SCN1A-204ENST00000423058 DSTQ03001 7570 aaKnown RBP1.35□□□□□ -2.19
SCN1A-204ENST00000423058 MDN1Q9NU22 5596 aa1.34□□□□□ -2.19
SCN1A-204ENST00000423058 GPR98Q8WXG9 6306 aa1.32□□□□□ -2.2
SCN1A-204ENST00000423058 FCGBPQ9Y6R7 5405 aaPredicted RBP1.26□□□□□ -2.21
SCN1A-204ENST00000423058 KRTAP5-3Q6L8H2 238 aa1.23□□□□□ -2.21
SCN1A-204ENST00000423058 KRTAP5-5Q701N2 237 aaPredicted RBP1.23□□□□□ -2.21
SCN1A-204ENST00000423058 PHGR1C9JFL3 82 aa1.16□□□□□ -2.22
SCN1A-204ENST00000423058 MUC5ACP98088 5654 aa1.13□□□□□ -2.23
SCN1A-204ENST00000423058 HMCN1Q96RW7 5635 aa1.11□□□□□ -2.23
SCN1A-204ENST00000423058 AHNAKQ09666 5890 aaKnown RBP1.11□□□□□ -2.23
SCN1A-204ENST00000423058 MUC5BQ9HC84 5762 aaPredicted RBP1.1□□□□□ -2.23
SCN1A-204ENST00000423058 KRTAP5-8O75690 187 aa1.09□□□□□ -2.23
SCN1A-204ENST00000423058 MUC19Q7Z5P9 8384 aa1.08□□□□□ -2.24
SCN1A-204ENST00000423058 MUC12Q9UKN1 5478 aa1.07□□□□□ -2.24
SCN1A-204ENST00000423058 KRTAP5-10Q6L8G5 202 aa1.06□□□□□ -2.24
SCN1A-204ENST00000423058 KRTAP5-11Q6L8G4 156 aa1.03□□□□□ -2.24
SCN1A-204ENST00000423058 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.99□□□□□ -2.25
SCN1A-204ENST00000423058 AHNAK2Q8IVF2 5795 aa0.98□□□□□ -2.25
SCN1A-204ENST00000423058 KRTAP5-7Q6L8G8 165 aa0.91□□□□□ -2.26
SCN1A-204ENST00000423058 KRTAP21-1Q3LI58 79 aa0.91□□□□□ -2.26
SCN1A-204ENST00000423058 KRTAP5-1Q6L8H4 278 aa0.89□□□□□ -2.27
SCN1A-204ENST00000423058 KRTAP21-2Q3LI59 83 aa0.84□□□□□ -2.27
SCN1A-204ENST00000423058 MUC16Q8WXI7 14507 aa0.69□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 7.3 ms