RNA–Protein interactions for RNA: ENST00000419533.1

UBR4-206, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 5,583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-206ENST00000419533 LCE3BQ5TA77 95 aa2.92□□□□□ -1.94
UBR4-206ENST00000419533 KRTAP4-8A0A0G2JLE6 195 aa2.9□□□□□ -1.95
UBR4-206ENST00000419533 KRTAP4-8Q9BYQ9 185 aa2.9□□□□□ -1.95
UBR4-206ENST00000419533 KRTAP20-1Q3LI63 56 aa2.85□□□□□ -1.95
UBR4-206ENST00000419533 KRTAP19-3Q7Z4W3 81 aa2.84□□□□□ -1.95
UBR4-206ENST00000419533 MT1LQ93083 61 aa2.77□□□□□ -1.97
UBR4-206ENST00000419533 KRTAP2-3P0C7H8 128 aa2.76□□□□□ -1.97
UBR4-206ENST00000419533 KRTAP2-4Q9BYR9 128 aa2.76□□□□□ -1.97
UBR4-206ENST00000419533 MT1EP04732 61 aa2.76□□□□□ -1.97
UBR4-206ENST00000419533 LCE3DQ9BYE3 92 aa2.76□□□□□ -1.97
UBR4-206ENST00000419533 LCE1AQ5T7P2 110 aa2.74□□□□□ -1.97
UBR4-206ENST00000419533 FSIP2Q5CZC0 6907 aa2.73□□□□□ -1.97
UBR4-206ENST00000419533 LCE3EQ5T5B0 92 aa2.71□□□□□ -1.97
UBR4-206ENST00000419533 MT1MQ8N339 61 aa2.69□□□□□ -1.98
UBR4-206ENST00000419533 MUC2Q02817 5179 aa2.69□□□□□ -1.98
UBR4-206ENST00000419533 KRTAP4-7Q9BYR0 210 aa2.68□□□□□ -1.98
UBR4-206ENST00000419533 KRTAP2-2Q9BYT5 123 aa2.66□□□□□ -1.98
UBR4-206ENST00000419533 KRTAP2-1Q9BYU5 128 aa2.66□□□□□ -1.98
UBR4-206ENST00000419533 MT3P25713 68 aa2.66□□□□□ -1.98
UBR4-206ENST00000419533 MT4P47944 62 aa2.66□□□□□ -1.98
UBR4-206ENST00000419533 SYNE2Q8WXH0 6885 aaKnown RBP2.62□□□□□ -1.99
UBR4-206ENST00000419533 USH2AO75445 5202 aa2.6□□□□□ -1.99
UBR4-206ENST00000419533 KRTAP19-7Q3SYF9 63 aa2.6□□□□□ -1.99
UBR4-206ENST00000419533 KRTAP5-9P26371 169 aa2.58□□□□□ -2
UBR4-206ENST00000419533 SSPOA2VEC9 5147 aa2.57□□□□□ -2
UBR4-206ENST00000419533 LCE4AQ5TA78 99 aa2.56□□□□□ -2
UBR4-206ENST00000419533 LOC100996750A0A140TA64 210 aa2.54□□□□□ -2
UBR4-206ENST00000419533 KRTAP4-3Q9BYR4 195 aa2.53□□□□□ -2
UBR4-206ENST00000419533 LCE5AQ5TCM9 118 aa2.53□□□□□ -2
UBR4-206ENST00000419533 MT1AP04731 61 aa2.51□□□□□ -2.01
UBR4-206ENST00000419533 LCE1DQ5T752 114 aa2.49□□□□□ -2.01
UBR4-206ENST00000419533 LCE1BQ5T7P3 118 aa2.49□□□□□ -2.01
UBR4-206ENST00000419533 NEBP20929 6669 aa2.49□□□□□ -2.01
UBR4-206ENST00000419533 FCGBPQ9Y6R7 5405 aaPredicted RBP2.47□□□□□ -2.01
UBR4-206ENST00000419533 PRM1P04553 51 aa2.45□□□□□ -2.02
UBR4-206ENST00000419533 MACF1Q9UPN3 7388 aaKnown RBP2.43□□□□□ -2.02
UBR4-206ENST00000419533 KRTAP4-9Q9BYQ8 210 aa2.4□□□□□ -2.03
UBR4-206ENST00000419533 SYNE1Q8NF91 8797 aaKnown RBP2.39□□□□□ -2.03
UBR4-206ENST00000419533 KRTAP9-6A8MVA2 160 aa2.34□□□□□ -2.04
UBR4-206ENST00000419533 KRTAP9-4Q9BYQ2 154 aa2.32□□□□□ -2.04
UBR4-206ENST00000419533 KRTAP6-1Q3LI64 71 aa2.3□□□□□ -2.04
UBR4-206ENST00000419533 KRTAP6-2Q3LI66 62 aa2.3□□□□□ -2.04
UBR4-206ENST00000419533 KMT2DO14686 5537 aa2.18□□□□□ -2.06
UBR4-206ENST00000419533 OBSCNQ5VST9 7968 aa2.16□□□□□ -2.06
UBR4-206ENST00000419533 KRTAP20-2Q3LI61 65 aa2.15□□□□□ -2.06
UBR4-206ENST00000419533 KRTAP5-4Q6L8H1 288 aa2.15□□□□□ -2.07
UBR4-206ENST00000419533 MDN1Q9NU22 5596 aa2.15□□□□□ -2.07
UBR4-206ENST00000419533 LCE1CQ5T751 118 aa2.15□□□□□ -2.07
UBR4-206ENST00000419533 LCE1EQ5T753 118 aa2.15□□□□□ -2.07
UBR4-206ENST00000419533 LCE1FQ5T754 118 aa2.15□□□□□ -2.07
UBR4-206ENST00000419533 GPR98Q8WXG9 6306 aa2.14□□□□□ -2.07
UBR4-206ENST00000419533 KRTAP4-6Q9BYQ5 205 aa2.13□□□□□ -2.07
UBR4-206ENST00000419533 KRTAP9-9Q9BYP9 154 aa2.11□□□□□ -2.07
UBR4-206ENST00000419533 MUC12Q9UKN1 5478 aa2.08□□□□□ -2.08
UBR4-206ENST00000419533 KRTAP5-5Q701N2 237 aaPredicted RBP1.99□□□□□ -2.09
UBR4-206ENST00000419533 DSTQ03001 7570 aaKnown RBP1.99□□□□□ -2.09
UBR4-206ENST00000419533 KRTAP4-11Q9BYQ6 195 aa1.96□□□□□ -2.1
UBR4-206ENST00000419533 KRTAP5-3Q6L8H2 238 aa1.95□□□□□ -2.1
UBR4-206ENST00000419533 MUC19Q7Z5P9 8384 aa1.77□□□□□ -2.13
UBR4-206ENST00000419533 KRTAP5-2Q701N4 177 aa1.77□□□□□ -2.13
UBR4-206ENST00000419533 AHNAK2Q8IVF2 5795 aa1.75□□□□□ -2.13
UBR4-206ENST00000419533 HMCN1Q96RW7 5635 aa1.75□□□□□ -2.13
UBR4-206ENST00000419533 KRTAP5-8O75690 187 aa1.72□□□□□ -2.13
UBR4-206ENST00000419533 KRTAP4-12Q9BQ66 201 aa1.72□□□□□ -2.13
UBR4-206ENST00000419533 KRTAP4-2Q9BYR5 136 aa1.72□□□□□ -2.13
UBR4-206ENST00000419533 KRTAP5-10Q6L8G5 202 aa1.7□□□□□ -2.14
UBR4-206ENST00000419533 KRTAP5-7Q6L8G8 165 aa1.69□□□□□ -2.14
UBR4-206ENST00000419533 KRTAP4-4Q9BYR3 166 aa1.69□□□□□ -2.14
UBR4-206ENST00000419533 MUC5ACP98088 5654 aa1.66□□□□□ -2.14
UBR4-206ENST00000419533 AHNAKQ09666 5890 aaKnown RBP1.59□□□□□ -2.15
UBR4-206ENST00000419533 KRTAP5-1Q6L8H4 278 aa1.54□□□□□ -2.16
UBR4-206ENST00000419533 MUC5BQ9HC84 5762 aaPredicted RBP1.45□□□□□ -2.18
UBR4-206ENST00000419533 KRTAP5-11Q6L8G4 156 aa1.45□□□□□ -2.18
UBR4-206ENST00000419533 PHGR1C9JFL3 82 aa1.4□□□□□ -2.19
UBR4-206ENST00000419533 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.36□□□□□ -2.19
UBR4-206ENST00000419533 KRTAP21-2Q3LI59 83 aa1.28□□□□□ -2.21
UBR4-206ENST00000419533 KRTAP21-1Q3LI58 79 aa1.17□□□□□ -2.22
UBR4-206ENST00000419533 MUC16Q8WXI7 14507 aa0.82□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 45.9 ms