RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 RYR1P21817 5038 aa3.65□□□□□ -1.83
CCDC88A-204ENST00000413716 MUC17Q685J3 4493 aa3.64□□□□□ -1.83
CCDC88A-204ENST00000413716 KRTAP9-2Q9BYQ4 174 aa3.64□□□□□ -1.83
CCDC88A-204ENST00000413716 KRTAP4-3Q9BYR4 195 aa3.64□□□□□ -1.83
CCDC88A-204ENST00000413716 KRTAP19-6Q3LI70 58 aa3.61□□□□□ -1.83
CCDC88A-204ENST00000413716 RYR3Q15413 4870 aa3.59□□□□□ -1.83
CCDC88A-204ENST00000413716 LRP2P98164 4655 aa3.58□□□□□ -1.84
CCDC88A-204ENST00000413716 LCE4AQ5TA78 99 aa3.54□□□□□ -1.84
CCDC88A-204ENST00000413716 KRTAP20-1Q3LI63 56 aa3.49□□□□□ -1.85
CCDC88A-204ENST00000413716 KRTAP19-2Q3LHN2 52 aa3.46□□□□□ -1.85
CCDC88A-204ENST00000413716 SYNE2Q8WXH0 6885 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-204ENST00000413716 KRTAP9-6A0A140TA67 174 aa3.39□□□□□ -1.87
CCDC88A-204ENST00000413716 KRTAP9-7A8MTY7 169 aa3.39□□□□□ -1.87
CCDC88A-204ENST00000413716 KRTAP9-4Q9BYQ2 154 aa3.38□□□□□ -1.87
CCDC88A-204ENST00000413716 KRTAP2-2Q9BYT5 123 aa3.38□□□□□ -1.87
CCDC88A-204ENST00000413716 PCLOQ9Y6V0 5065 aa3.38□□□□□ -1.87
CCDC88A-204ENST00000413716 RYR2Q92736 4967 aa3.37□□□□□ -1.87
CCDC88A-204ENST00000413716 KRTAP6-1Q3LI64 71 aa3.36□□□□□ -1.87
CCDC88A-204ENST00000413716 KMT2CQ8NEZ4 4911 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-204ENST00000413716 KRTAP19-7Q3SYF9 63 aa3.33□□□□□ -1.88
CCDC88A-204ENST00000413716 HYDINQ4G0P3 5121 aa3.26□□□□□ -1.89
CCDC88A-204ENST00000413716 KIAA1109Q2LD37 5005 aa3.26□□□□□ -1.89
CCDC88A-204ENST00000413716 KRTAP9-9Q9BYP9 154 aa3.24□□□□□ -1.89
CCDC88A-204ENST00000413716 LCE2AQ5TA79 106 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-204ENST00000413716 HERC2O95714 4834 aa3.18□□□□□ -1.9
CCDC88A-204ENST00000413716 BIRC6Q9NR09 4857 aa3.18□□□□□ -1.9
CCDC88A-204ENST00000413716 KRTAP9-6A8MVA2 160 aa3.14□□□□□ -1.91
CCDC88A-204ENST00000413716 KRTAP6-3Q3LI67 103 aa3.12□□□□□ -1.91
CCDC88A-204ENST00000413716 KRTAP4-11Q9BYQ6 195 aa3.1□□□□□ -1.91
CCDC88A-204ENST00000413716 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-204ENST00000413716 SYNE1Q8NF91 8797 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-204ENST00000413716 HERC1Q15751 4861 aa3.02□□□□□ -1.93
CCDC88A-204ENST00000413716 HMCN2Q8NDA2 5059 aa3.01□□□□□ -1.93
CCDC88A-204ENST00000413716 KRTAP20-2Q3LI61 65 aa3.01□□□□□ -1.93
CCDC88A-204ENST00000413716 UBR4Q5T4S7 5183 aa2.83□□□□□ -1.96
CCDC88A-204ENST00000413716 EPPK1P58107 5090 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-204ENST00000413716 ABCA13Q86UQ4 5058 aa2.82□□□□□ -1.96
CCDC88A-204ENST00000413716 FSIP2Q5CZC0 6907 aa2.8□□□□□ -1.96
CCDC88A-204ENST00000413716 RNF213Q63HN8 5207 aa2.79□□□□□ -1.96
CCDC88A-204ENST00000413716 KRTAP4-4Q9BYR3 166 aa2.76□□□□□ -1.97
CCDC88A-204ENST00000413716 FAT4Q6V0I7 4981 aa2.72□□□□□ -1.97
CCDC88A-204ENST00000413716 MUC2Q02817 5179 aa2.69□□□□□ -1.98
CCDC88A-204ENST00000413716 OBSCNQ5VST9 7968 aa2.65□□□□□ -1.99
CCDC88A-204ENST00000413716 KRTAP4-6Q9BYQ5 205 aa2.62□□□□□ -1.99
CCDC88A-204ENST00000413716 KMT2DO14686 5537 aa2.6□□□□□ -1.99
CCDC88A-204ENST00000413716 KRTAP4-12Q9BQ66 201 aa2.6□□□□□ -1.99
CCDC88A-204ENST00000413716 KRTAP4-2Q9BYR5 136 aa2.6□□□□□ -1.99
CCDC88A-204ENST00000413716 KRTAP5-9P26371 169 aa2.54□□□□□ -2
CCDC88A-204ENST00000413716 FCGBPQ9Y6R7 5405 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-204ENST00000413716 KRTAP5-5Q701N2 237 aaPredicted RBP2.44□□□□□ -2.02
CCDC88A-204ENST00000413716 KRTAP5-4Q6L8H1 288 aa2.41□□□□□ -2.02
CCDC88A-204ENST00000413716 NEBP20929 6669 aa2.39□□□□□ -2.03
CCDC88A-204ENST00000413716 USH2AO75445 5202 aa2.39□□□□□ -2.03
CCDC88A-204ENST00000413716 DSTQ03001 7570 aaKnown RBP2.37□□□□□ -2.03
CCDC88A-204ENST00000413716 SSPOA2VEC9 5147 aa2.18□□□□□ -2.06
CCDC88A-204ENST00000413716 MUC19Q7Z5P9 8384 aa2.16□□□□□ -2.06
CCDC88A-204ENST00000413716 MUC12Q9UKN1 5478 aa2.15□□□□□ -2.07
CCDC88A-204ENST00000413716 MACF1Q9UPN3 7388 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-204ENST00000413716 MDN1Q9NU22 5596 aa2.1□□□□□ -2.07
CCDC88A-204ENST00000413716 KRTAP5-3Q6L8H2 238 aa2.06□□□□□ -2.08
CCDC88A-204ENST00000413716 PHGR1C9JFL3 82 aa2.04□□□□□ -2.08
CCDC88A-204ENST00000413716 MUC5ACP98088 5654 aa1.94□□□□□ -2.1
CCDC88A-204ENST00000413716 KRTAP5-10Q6L8G5 202 aa1.91□□□□□ -2.1
CCDC88A-204ENST00000413716 KRTAP5-2Q701N4 177 aa1.85□□□□□ -2.11
CCDC88A-204ENST00000413716 KRTAP5-8O75690 187 aa1.85□□□□□ -2.11
CCDC88A-204ENST00000413716 HMCN1Q96RW7 5635 aa1.79□□□□□ -2.12
CCDC88A-204ENST00000413716 MUC5BQ9HC84 5762 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-204ENST00000413716 KRTAP21-1Q3LI58 79 aa1.73□□□□□ -2.13
CCDC88A-204ENST00000413716 GPR98Q8WXG9 6306 aa1.72□□□□□ -2.13
CCDC88A-204ENST00000413716 KRTAP5-1Q6L8H4 278 aa1.65□□□□□ -2.15
CCDC88A-204ENST00000413716 KRTAP5-11Q6L8G4 156 aa1.61□□□□□ -2.15
CCDC88A-204ENST00000413716 KRTAP21-2Q3LI59 83 aa1.55□□□□□ -2.16
CCDC88A-204ENST00000413716 AHNAK2Q8IVF2 5795 aa1.5□□□□□ -2.17
CCDC88A-204ENST00000413716 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.48□□□□□ -2.17
CCDC88A-204ENST00000413716 AHNAKQ09666 5890 aaKnown RBP1.46□□□□□ -2.18
CCDC88A-204ENST00000413716 MUC16Q8WXI7 14507 aa1.32□□□□□ -2.2
CCDC88A-204ENST00000413716 KRTAP5-7Q6L8G8 165 aa1.21□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 8.8 ms