RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 LCE1FQ5T754 118 aa2.15□□□□□ -2.07
SYNE1-210ENST00000409694 LCE1AQ5T7P2 110 aa2.15□□□□□ -2.07
SYNE1-210ENST00000409694 KRTAP6-2Q3LI66 62 aa2.13□□□□□ -2.07
SYNE1-210ENST00000409694 KRTAP9-6A0A140TA67 174 aa2.12□□□□□ -2.07
SYNE1-210ENST00000409694 LCE4AQ5TA78 99 aa2.11□□□□□ -2.07
SYNE1-210ENST00000409694 KRTAP4-3Q9BYR4 195 aa2.08□□□□□ -2.08
SYNE1-210ENST00000409694 MUC17Q685J3 4493 aa2.07□□□□□ -2.08
SYNE1-210ENST00000409694 KRTAP9-4Q9BYQ2 154 aa2.07□□□□□ -2.08
SYNE1-210ENST00000409694 DNHD1Q96M86 4753 aa2.05□□□□□ -2.08
SYNE1-210ENST00000409694 RYR3Q15413 4870 aa2.05□□□□□ -2.08
SYNE1-210ENST00000409694 KRTAP4-9Q9BYQ8 210 aa2.04□□□□□ -2.08
SYNE1-210ENST00000409694 KRTAP19-7Q3SYF9 63 aa2.02□□□□□ -2.09
SYNE1-210ENST00000409694 PCLOQ9Y6V0 5065 aa2.01□□□□□ -2.09
SYNE1-210ENST00000409694 KRTAP19-2Q3LHN2 52 aa1.99□□□□□ -2.09
SYNE1-210ENST00000409694 KRTAP6-3Q3LI67 103 aa1.99□□□□□ -2.09
SYNE1-210ENST00000409694 KRTAP6-1Q3LI64 71 aa1.98□□□□□ -2.09
SYNE1-210ENST00000409694 KRTAP9-7A8MTY7 169 aa1.97□□□□□ -2.09
SYNE1-210ENST00000409694 RYR2Q92736 4967 aa1.96□□□□□ -2.1
SYNE1-210ENST00000409694 LCE2AQ5TA79 106 aaPredicted RBP1.95□□□□□ -2.1
SYNE1-210ENST00000409694 KRTAP9-9Q9BYP9 154 aa1.95□□□□□ -2.1
SYNE1-210ENST00000409694 KRTAP2-2Q9BYT5 123 aa1.95□□□□□ -2.1
SYNE1-210ENST00000409694 HERC2O95714 4834 aa1.88□□□□□ -2.11
SYNE1-210ENST00000409694 SYNE2Q8WXH0 6885 aaKnown RBP1.86□□□□□ -2.11
SYNE1-210ENST00000409694 HERC1Q15751 4861 aa1.86□□□□□ -2.11
SYNE1-210ENST00000409694 BIRC6Q9NR09 4857 aa1.84□□□□□ -2.12
SYNE1-210ENST00000409694 LRP2P98164 4655 aa1.83□□□□□ -2.12
SYNE1-210ENST00000409694 KMT2CQ8NEZ4 4911 aaKnown RBP1.82□□□□□ -2.12
SYNE1-210ENST00000409694 KRTAP9-6A8MVA2 160 aa1.8□□□□□ -2.12
SYNE1-210ENST00000409694 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.8□□□□□ -2.12
SYNE1-210ENST00000409694 HYDINQ4G0P3 5121 aa1.75□□□□□ -2.13
SYNE1-210ENST00000409694 KRTAP4-11Q9BYQ6 195 aa1.74□□□□□ -2.13
SYNE1-210ENST00000409694 KIAA1109Q2LD37 5005 aa1.74□□□□□ -2.13
SYNE1-210ENST00000409694 EPPK1P58107 5090 aaKnown RBP1.73□□□□□ -2.13
SYNE1-210ENST00000409694 KRTAP20-2Q3LI61 65 aa1.7□□□□□ -2.14
SYNE1-210ENST00000409694 HMCN2Q8NDA2 5059 aa1.69□□□□□ -2.14
SYNE1-210ENST00000409694 KRTAP5-9P26371 169 aa1.69□□□□□ -2.14
SYNE1-210ENST00000409694 RNF213Q63HN8 5207 aa1.64□□□□□ -2.15
SYNE1-210ENST00000409694 SYNE1Q8NF91 8797 aaKnown RBP1.63□□□□□ -2.15
SYNE1-210ENST00000409694 ABCA13Q86UQ4 5058 aa1.63□□□□□ -2.15
SYNE1-210ENST00000409694 MUC2Q02817 5179 aa1.57□□□□□ -2.16
SYNE1-210ENST00000409694 UBR4Q5T4S7 5183 aa1.57□□□□□ -2.16
SYNE1-210ENST00000409694 FSIP2Q5CZC0 6907 aa1.56□□□□□ -2.16
SYNE1-210ENST00000409694 NEBP20929 6669 aa1.55□□□□□ -2.16
SYNE1-210ENST00000409694 KRTAP5-4Q6L8H1 288 aa1.53□□□□□ -2.16
SYNE1-210ENST00000409694 KRTAP4-4Q9BYR3 166 aa1.52□□□□□ -2.17
SYNE1-210ENST00000409694 MDN1Q9NU22 5596 aa1.5□□□□□ -2.17
SYNE1-210ENST00000409694 KRTAP4-6Q9BYQ5 205 aa1.5□□□□□ -2.17
SYNE1-210ENST00000409694 GPR98Q8WXG9 6306 aa1.47□□□□□ -2.17
SYNE1-210ENST00000409694 OBSCNQ5VST9 7968 aa1.47□□□□□ -2.17
SYNE1-210ENST00000409694 FAT4Q6V0I7 4981 aa1.47□□□□□ -2.17
SYNE1-210ENST00000409694 KRTAP4-12Q9BQ66 201 aa1.45□□□□□ -2.18
SYNE1-210ENST00000409694 KRTAP4-2Q9BYR5 136 aa1.45□□□□□ -2.18
SYNE1-210ENST00000409694 KRTAP5-5Q701N2 237 aaPredicted RBP1.45□□□□□ -2.18
SYNE1-210ENST00000409694 MACF1Q9UPN3 7388 aaKnown RBP1.4□□□□□ -2.19
SYNE1-210ENST00000409694 MUC12Q9UKN1 5478 aa1.39□□□□□ -2.19
SYNE1-210ENST00000409694 MUC5ACP98088 5654 aa1.38□□□□□ -2.19
SYNE1-210ENST00000409694 SSPOA2VEC9 5147 aa1.35□□□□□ -2.19
SYNE1-210ENST00000409694 KMT2DO14686 5537 aa1.34□□□□□ -2.19
SYNE1-210ENST00000409694 KRTAP5-3Q6L8H2 238 aa1.32□□□□□ -2.2
SYNE1-210ENST00000409694 AHNAK2Q8IVF2 5795 aa1.31□□□□□ -2.2
SYNE1-210ENST00000409694 USH2AO75445 5202 aa1.3□□□□□ -2.2
SYNE1-210ENST00000409694 DSTQ03001 7570 aaKnown RBP1.27□□□□□ -2.21
SYNE1-210ENST00000409694 FCGBPQ9Y6R7 5405 aaPredicted RBP1.26□□□□□ -2.21
SYNE1-210ENST00000409694 PHGR1C9JFL3 82 aa1.2□□□□□ -2.22
SYNE1-210ENST00000409694 HMCN1Q96RW7 5635 aa1.2□□□□□ -2.22
SYNE1-210ENST00000409694 MUC5BQ9HC84 5762 aaPredicted RBP1.16□□□□□ -2.22
SYNE1-210ENST00000409694 KRTAP5-10Q6L8G5 202 aa1.15□□□□□ -2.23
SYNE1-210ENST00000409694 MUC19Q7Z5P9 8384 aa1.15□□□□□ -2.23
SYNE1-210ENST00000409694 KRTAP5-2Q701N4 177 aa1.14□□□□□ -2.23
SYNE1-210ENST00000409694 AHNAKQ09666 5890 aaKnown RBP1.13□□□□□ -2.23
SYNE1-210ENST00000409694 KRTAP5-8O75690 187 aa1.12□□□□□ -2.23
SYNE1-210ENST00000409694 KRTAP5-11Q6L8G4 156 aa1.1□□□□□ -2.23
SYNE1-210ENST00000409694 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.03□□□□□ -2.24
SYNE1-210ENST00000409694 KRTAP21-1Q3LI58 79 aa1.01□□□□□ -2.25
SYNE1-210ENST00000409694 KRTAP5-1Q6L8H4 278 aa0.99□□□□□ -2.25
SYNE1-210ENST00000409694 KRTAP5-7Q6L8G8 165 aa0.97□□□□□ -2.25
SYNE1-210ENST00000409694 KRTAP21-2Q3LI59 83 aa0.93□□□□□ -2.26
SYNE1-210ENST00000409694 MUC16Q8WXI7 14507 aa0.81□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 69.9 ms