RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 EPPK1P58107 5090 aaKnown RBP1.76□□□□□ -2.13
SCN1A-203ENST00000409050 KRTAP9-6A0A140TA67 174 aa1.75□□□□□ -2.13
SCN1A-203ENST00000409050 KIAA1109Q2LD37 5005 aa1.75□□□□□ -2.13
SCN1A-203ENST00000409050 KRTAP19-7Q3SYF9 63 aa1.74□□□□□ -2.13
SCN1A-203ENST00000409050 KRTAP4-7Q9BYR0 210 aa1.72□□□□□ -2.13
SCN1A-203ENST00000409050 KRTAP2-2Q9BYT5 123 aa1.72□□□□□ -2.13
SCN1A-203ENST00000409050 LCE4AQ5TA78 99 aa1.71□□□□□ -2.14
SCN1A-203ENST00000409050 HYDINQ4G0P3 5121 aa1.71□□□□□ -2.14
SCN1A-203ENST00000409050 LCE1BQ5T7P3 118 aa1.71□□□□□ -2.14
SCN1A-203ENST00000409050 KRTAP20-1Q3LI63 56 aa1.7□□□□□ -2.14
SCN1A-203ENST00000409050 LCE1DQ5T752 114 aa1.7□□□□□ -2.14
SCN1A-203ENST00000409050 FLGP20930 4061 aaPredicted RBP1.67□□□□□ -2.14
SCN1A-203ENST00000409050 KRTAP9-4Q9BYQ2 154 aa1.67□□□□□ -2.14
SCN1A-203ENST00000409050 LCE2AQ5TA79 106 aaPredicted RBP1.67□□□□□ -2.14
SCN1A-203ENST00000409050 KRTAP6-3Q3LI67 103 aa1.66□□□□□ -2.14
SCN1A-203ENST00000409050 LPAP08519 4548 aa1.65□□□□□ -2.15
SCN1A-203ENST00000409050 KRTAP9-7A8MTY7 169 aa1.65□□□□□ -2.15
SCN1A-203ENST00000409050 LOC100996750A0A140TA64 210 aa1.64□□□□□ -2.15
SCN1A-203ENST00000409050 PKHD1P08F94 4074 aa1.63□□□□□ -2.15
SCN1A-203ENST00000409050 KRTAP4-3Q9BYR4 195 aa1.63□□□□□ -2.15
SCN1A-203ENST00000409050 LCE5AQ5TCM9 118 aa1.63□□□□□ -2.15
SCN1A-203ENST00000409050 HMCN2Q8NDA2 5059 aa1.62□□□□□ -2.15
SCN1A-203ENST00000409050 TNXBP22105 4242 aa1.62□□□□□ -2.15
SCN1A-203ENST00000409050 KRTAP6-2Q3LI66 62 aa1.6□□□□□ -2.15
SCN1A-203ENST00000409050 MUC2Q02817 5179 aa1.57□□□□□ -2.16
SCN1A-203ENST00000409050 KRTAP9-6A8MVA2 160 aa1.57□□□□□ -2.16
SCN1A-203ENST00000409050 KRTAP6-1Q3LI64 71 aa1.57□□□□□ -2.16
SCN1A-203ENST00000409050 UBR4Q5T4S7 5183 aa1.57□□□□□ -2.16
SCN1A-203ENST00000409050 GPR98Q8WXG9 6306 aa1.56□□□□□ -2.16
SCN1A-203ENST00000409050 ABCA13Q86UQ4 5058 aa1.55□□□□□ -2.16
SCN1A-203ENST00000409050 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.55□□□□□ -2.16
SCN1A-203ENST00000409050 KRTAP4-9Q9BYQ8 210 aa1.53□□□□□ -2.16
SCN1A-203ENST00000409050 SYNE2Q8WXH0 6885 aaKnown RBP1.52□□□□□ -2.17
SCN1A-203ENST00000409050 LCE1CQ5T751 118 aa1.51□□□□□ -2.17
SCN1A-203ENST00000409050 LCE1EQ5T753 118 aa1.51□□□□□ -2.17
SCN1A-203ENST00000409050 LCE1FQ5T754 118 aa1.51□□□□□ -2.17
SCN1A-203ENST00000409050 RNF213Q63HN8 5207 aa1.51□□□□□ -2.17
SCN1A-203ENST00000409050 OBSCNQ5VST9 7968 aa1.5□□□□□ -2.17
SCN1A-203ENST00000409050 KRTAP4-6Q9BYQ5 205 aa1.49□□□□□ -2.17
SCN1A-203ENST00000409050 FAT4Q6V0I7 4981 aa1.49□□□□□ -2.17
SCN1A-203ENST00000409050 FSIP2Q5CZC0 6907 aa1.46□□□□□ -2.17
SCN1A-203ENST00000409050 MUC12Q9UKN1 5478 aa1.45□□□□□ -2.18
SCN1A-203ENST00000409050 MACF1Q9UPN3 7388 aaKnown RBP1.44□□□□□ -2.18
SCN1A-203ENST00000409050 KRTAP9-9Q9BYP9 154 aa1.41□□□□□ -2.18
SCN1A-203ENST00000409050 KRTAP5-9P26371 169 aa1.39□□□□□ -2.19
SCN1A-203ENST00000409050 HMCN1Q96RW7 5635 aa1.39□□□□□ -2.19
SCN1A-203ENST00000409050 USH2AO75445 5202 aa1.38□□□□□ -2.19
SCN1A-203ENST00000409050 MUC19Q7Z5P9 8384 aa1.35□□□□□ -2.19
SCN1A-203ENST00000409050 KRTAP5-5Q701N2 237 aaPredicted RBP1.34□□□□□ -2.2
SCN1A-203ENST00000409050 KMT2DO14686 5537 aa1.31□□□□□ -2.2
SCN1A-203ENST00000409050 NEBP20929 6669 aa1.31□□□□□ -2.2
SCN1A-203ENST00000409050 KRTAP20-2Q3LI61 65 aa1.3□□□□□ -2.2
SCN1A-203ENST00000409050 DSTQ03001 7570 aaKnown RBP1.29□□□□□ -2.2
SCN1A-203ENST00000409050 MDN1Q9NU22 5596 aa1.29□□□□□ -2.2
SCN1A-203ENST00000409050 FCGBPQ9Y6R7 5405 aaPredicted RBP1.29□□□□□ -2.2
SCN1A-203ENST00000409050 KRTAP5-4Q6L8H1 288 aa1.28□□□□□ -2.2
SCN1A-203ENST00000409050 KRTAP4-11Q9BYQ6 195 aa1.26□□□□□ -2.21
SCN1A-203ENST00000409050 AHNAK2Q8IVF2 5795 aa1.25□□□□□ -2.21
SCN1A-203ENST00000409050 SSPOA2VEC9 5147 aa1.24□□□□□ -2.21
SCN1A-203ENST00000409050 KRTAP4-12Q9BQ66 201 aa1.24□□□□□ -2.21
SCN1A-203ENST00000409050 KRTAP5-2Q701N4 177 aa1.22□□□□□ -2.21
SCN1A-203ENST00000409050 KRTAP4-2Q9BYR5 136 aa1.17□□□□□ -2.22
SCN1A-203ENST00000409050 KRTAP4-4Q9BYR3 166 aa1.15□□□□□ -2.22
SCN1A-203ENST00000409050 MUC5BQ9HC84 5762 aaPredicted RBP1.13□□□□□ -2.23
SCN1A-203ENST00000409050 KRTAP5-3Q6L8H2 238 aa1.12□□□□□ -2.23
SCN1A-203ENST00000409050 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.08□□□□□ -2.24
SCN1A-203ENST00000409050 MUC5ACP98088 5654 aa1.05□□□□□ -2.24
SCN1A-203ENST00000409050 AHNAKQ09666 5890 aaKnown RBP1.01□□□□□ -2.25
SCN1A-203ENST00000409050 KRTAP21-1Q3LI58 79 aa0.99□□□□□ -2.25
SCN1A-203ENST00000409050 KRTAP5-10Q6L8G5 202 aa0.99□□□□□ -2.25
SCN1A-203ENST00000409050 KRTAP5-1Q6L8H4 278 aa0.98□□□□□ -2.25
SCN1A-203ENST00000409050 KRTAP5-11Q6L8G4 156 aa0.95□□□□□ -2.26
SCN1A-203ENST00000409050 PHGR1C9JFL3 82 aa0.93□□□□□ -2.26
SCN1A-203ENST00000409050 KRTAP5-8O75690 187 aa0.93□□□□□ -2.26
SCN1A-203ENST00000409050 KRTAP5-7Q6L8G8 165 aa0.9□□□□□ -2.26
SCN1A-203ENST00000409050 KRTAP21-2Q3LI59 83 aa0.8□□□□□ -2.28
SCN1A-203ENST00000409050 MUC16Q8WXI7 14507 aa0.56□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 9.3 ms