RNA–Protein interactions for RNA: ENST00000395198.7

HERC4-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERC4, Length 4,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-204ENST00000395198 MT2AP02795 61 aa1.48□□□□□ -2.17
HERC4-204ENST00000395198 MUC2Q02817 5179 aa1.48□□□□□ -2.17
HERC4-204ENST00000395198 KRTAP8-1Q8IUC2 63 aa1.48□□□□□ -2.17
HERC4-204ENST00000395198 MT1FP04733 61 aa1.46□□□□□ -2.18
HERC4-204ENST00000395198 UBR4Q5T4S7 5183 aa1.45□□□□□ -2.18
HERC4-204ENST00000395198 KRTAP12-3P60328 96 aa1.43□□□□□ -2.18
HERC4-204ENST00000395198 SPRR2FQ96RM1 72 aa1.42□□□□□ -2.18
HERC4-204ENST00000395198 AHNAKQ09666 5890 aaKnown RBP1.42□□□□□ -2.18
HERC4-204ENST00000395198 FAT4Q6V0I7 4981 aa1.41□□□□□ -2.18
HERC4-204ENST00000395198 SPRR2GQ9BYE4 73 aa1.41□□□□□ -2.18
HERC4-204ENST00000395198 LCE3AQ5TA76 89 aa1.4□□□□□ -2.18
HERC4-204ENST00000395198 KRTAP20-1Q3LI63 56 aa1.39□□□□□ -2.19
HERC4-204ENST00000395198 KRTAP2-3P0C7H8 128 aa1.39□□□□□ -2.19
HERC4-204ENST00000395198 KRTAP4-11Q9BYQ6 195 aa1.39□□□□□ -2.19
HERC4-204ENST00000395198 KRTAP2-4Q9BYR9 128 aa1.39□□□□□ -2.19
HERC4-204ENST00000395198 KRTAP2-1Q9BYU5 128 aa1.39□□□□□ -2.19
HERC4-204ENST00000395198 RNF213Q63HN8 5207 aa1.38□□□□□ -2.19
HERC4-204ENST00000395198 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.37□□□□□ -2.19
HERC4-204ENST00000395198 FSIP2Q5CZC0 6907 aa1.37□□□□□ -2.19
HERC4-204ENST00000395198 KRTAP19-2Q3LHN2 52 aa1.36□□□□□ -2.19
HERC4-204ENST00000395198 SYNE1Q8NF91 8797 aaKnown RBP1.35□□□□□ -2.19
HERC4-204ENST00000395198 NEBP20929 6669 aa1.35□□□□□ -2.19
HERC4-204ENST00000395198 KRTAP5-2Q701N4 177 aa1.35□□□□□ -2.19
HERC4-204ENST00000395198 SPRR2EP22531 72 aa1.34□□□□□ -2.2
HERC4-204ENST00000395198 SPRR2BP35325 72 aa1.34□□□□□ -2.2
HERC4-204ENST00000395198 SPRR2AP35326 72 aa1.34□□□□□ -2.2
HERC4-204ENST00000395198 KRTAP19-8Q3LI54 63 aa1.33□□□□□ -2.2
HERC4-204ENST00000395198 LCE3BQ5TA77 95 aa1.33□□□□□ -2.2
HERC4-204ENST00000395198 MT1BP07438 61 aa1.31□□□□□ -2.2
HERC4-204ENST00000395198 KRTAP19-5Q3LI72 72 aa1.31□□□□□ -2.2
HERC4-204ENST00000395198 SPRR2DP22532 72 aa1.31□□□□□ -2.2
HERC4-204ENST00000395198 SSPOA2VEC9 5147 aa1.3□□□□□ -2.2
HERC4-204ENST00000395198 MT1XP80297 61 aa1.28□□□□□ -2.2
HERC4-204ENST00000395198 KRTAP9-6A8MVA2 160 aa1.26□□□□□ -2.21
HERC4-204ENST00000395198 MUC5BQ9HC84 5762 aaPredicted RBP1.25□□□□□ -2.21
HERC4-204ENST00000395198 SYNE2Q8WXH0 6885 aaKnown RBP1.24□□□□□ -2.21
HERC4-204ENST00000395198 PRM1P04553 51 aa1.24□□□□□ -2.21
HERC4-204ENST00000395198 KRTAP19-6Q3LI70 58 aa1.24□□□□□ -2.21
HERC4-204ENST00000395198 HMCN1Q96RW7 5635 aa1.23□□□□□ -2.21
HERC4-204ENST00000395198 MACF1Q9UPN3 7388 aaKnown RBP1.23□□□□□ -2.21
HERC4-204ENST00000395198 MT1GP13640 62 aa1.23□□□□□ -2.21
HERC4-204ENST00000395198 USH2AO75445 5202 aa1.22□□□□□ -2.21
HERC4-204ENST00000395198 KRTAP5-9P26371 169 aa1.22□□□□□ -2.21
HERC4-204ENST00000395198 OBSCNQ5VST9 7968 aa1.21□□□□□ -2.22
HERC4-204ENST00000395198 AHNAK2Q8IVF2 5795 aa1.21□□□□□ -2.22
HERC4-204ENST00000395198 KMT2DO14686 5537 aa1.2□□□□□ -2.22
HERC4-204ENST00000395198 KRTAP19-3Q7Z4W3 81 aa1.19□□□□□ -2.22
HERC4-204ENST00000395198 LCE1CQ5T751 118 aa1.18□□□□□ -2.22
HERC4-204ENST00000395198 LCE1BQ5T7P3 118 aa1.18□□□□□ -2.22
HERC4-204ENST00000395198 KRTAP5-5Q701N2 237 aaPredicted RBP1.18□□□□□ -2.22
HERC4-204ENST00000395198 MT1EP04732 61 aa1.16□□□□□ -2.22
HERC4-204ENST00000395198 MT4P47944 62 aa1.16□□□□□ -2.22
HERC4-204ENST00000395198 MT1LQ93083 61 aa1.15□□□□□ -2.23
HERC4-204ENST00000395198 DSTQ03001 7570 aaKnown RBP1.15□□□□□ -2.23
HERC4-204ENST00000395198 MT1MQ8N339 61 aa1.13□□□□□ -2.23
HERC4-204ENST00000395198 KRTAP5-4Q6L8H1 288 aa1.11□□□□□ -2.23
HERC4-204ENST00000395198 KRTAP4-3Q9BYR4 195 aa1.11□□□□□ -2.23
HERC4-204ENST00000395198 FCGBPQ9Y6R7 5405 aaPredicted RBP1.1□□□□□ -2.23
HERC4-204ENST00000395198 KRTAP19-7Q3SYF9 63 aa1.09□□□□□ -2.23
HERC4-204ENST00000395198 KRTAP5-7Q6L8G8 165 aa1.05□□□□□ -2.24
HERC4-204ENST00000395198 MUC19Q7Z5P9 8384 aa1.04□□□□□ -2.24
HERC4-204ENST00000395198 MDN1Q9NU22 5596 aa1.04□□□□□ -2.24
HERC4-204ENST00000395198 MT1AP04731 61 aa1.02□□□□□ -2.25
HERC4-204ENST00000395198 KRTAP4-4Q9BYR3 166 aa1.01□□□□□ -2.25
HERC4-204ENST00000395198 KRTAP6-2Q3LI66 62 aa1□□□□□ -2.25
HERC4-204ENST00000395198 MUC12Q9UKN1 5478 aa0.99□□□□□ -2.25
HERC4-204ENST00000395198 KRTAP6-1Q3LI64 71 aa0.97□□□□□ -2.25
HERC4-204ENST00000395198 MUC5ACP98088 5654 aa0.96□□□□□ -2.26
HERC4-204ENST00000395198 KRTAP5-8O75690 187 aa0.94□□□□□ -2.26
HERC4-204ENST00000395198 KRTAP5-10Q6L8G5 202 aa0.93□□□□□ -2.26
HERC4-204ENST00000395198 KRTAP21-1Q3LI58 79 aa0.92□□□□□ -2.26
HERC4-204ENST00000395198 KRTAP5-11Q6L8G4 156 aa0.92□□□□□ -2.26
HERC4-204ENST00000395198 KRTAP20-2Q3LI61 65 aa0.88□□□□□ -2.27
HERC4-204ENST00000395198 KRTAP5-1Q6L8H4 278 aa0.86□□□□□ -2.27
HERC4-204ENST00000395198 PHGR1C9JFL3 82 aa0.71□□□□□ -2.3
HERC4-204ENST00000395198 KRTAP21-2Q3LI59 83 aa0.59□□□□□ -2.31
HERC4-204ENST00000395198 MUC16Q8WXI7 14507 aa0.56□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 100 ms