RNA–Protein interactions for RNA: ENST00000380833.8

CLCN4-202, Transcript of chloride voltage-gated channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN4, Length 6,750 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-202ENST00000380833 KRTAP2-3P0C7H8 128 aa3.3□□□□□ -1.88
CLCN4-202ENST00000380833 KRTAP2-4Q9BYR9 128 aa3.3□□□□□ -1.88
CLCN4-202ENST00000380833 KRTAP6-3Q3LI67 103 aa3.29□□□□□ -1.88
CLCN4-202ENST00000380833 MT1LQ93083 61 aa3.29□□□□□ -1.88
CLCN4-202ENST00000380833 SYNE2Q8WXH0 6885 aaKnown RBP3.28□□□□□ -1.89
CLCN4-202ENST00000380833 KRTAP4-9Q9BYQ8 210 aa3.26□□□□□ -1.89
CLCN4-202ENST00000380833 TNXBP22105 4242 aa3.25□□□□□ -1.89
CLCN4-202ENST00000380833 LCE2AQ5TA79 106 aaPredicted RBP3.25□□□□□ -1.89
CLCN4-202ENST00000380833 MT1EP04732 61 aa3.25□□□□□ -1.89
CLCN4-202ENST00000380833 KMT2CQ8NEZ4 4911 aaKnown RBP3.24□□□□□ -1.89
CLCN4-202ENST00000380833 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.23□□□□□ -1.89
CLCN4-202ENST00000380833 MT1MQ8N339 61 aa3.21□□□□□ -1.9
CLCN4-202ENST00000380833 KRTAP2-1Q9BYU5 128 aa3.21□□□□□ -1.9
CLCN4-202ENST00000380833 LRP2P98164 4655 aa3.21□□□□□ -1.9
CLCN4-202ENST00000380833 FSIP2Q5CZC0 6907 aa3.18□□□□□ -1.9
CLCN4-202ENST00000380833 LCE1CQ5T751 118 aa3.17□□□□□ -1.9
CLCN4-202ENST00000380833 LCE1EQ5T753 118 aa3.17□□□□□ -1.9
CLCN4-202ENST00000380833 LCE1FQ5T754 118 aa3.17□□□□□ -1.9
CLCN4-202ENST00000380833 LCE1AQ5T7P2 110 aa3.17□□□□□ -1.9
CLCN4-202ENST00000380833 KRTAP2-2Q9BYT5 123 aa3.15□□□□□ -1.91
CLCN4-202ENST00000380833 KRTAP19-2Q3LHN2 52 aa3.11□□□□□ -1.91
CLCN4-202ENST00000380833 FLGP20930 4061 aaPredicted RBP3.08□□□□□ -1.92
CLCN4-202ENST00000380833 EPPK1P58107 5090 aaKnown RBP3.06□□□□□ -1.92
CLCN4-202ENST00000380833 LCE4AQ5TA78 99 aa3.06□□□□□ -1.92
CLCN4-202ENST00000380833 MUC17Q685J3 4493 aa3.05□□□□□ -1.92
CLCN4-202ENST00000380833 KRTAP6-2Q3LI66 62 aa3.01□□□□□ -1.93
CLCN4-202ENST00000380833 MT1AP04731 61 aa3□□□□□ -1.93
CLCN4-202ENST00000380833 ABCA13Q86UQ4 5058 aa2.95□□□□□ -1.94
CLCN4-202ENST00000380833 KRTAP6-1Q3LI64 71 aa2.87□□□□□ -1.95
CLCN4-202ENST00000380833 MUC2Q02817 5179 aa2.86□□□□□ -1.95
CLCN4-202ENST00000380833 SYNE1Q8NF91 8797 aaKnown RBP2.84□□□□□ -1.96
CLCN4-202ENST00000380833 KRTAP19-7Q3SYF9 63 aa2.83□□□□□ -1.96
CLCN4-202ENST00000380833 FAT4Q6V0I7 4981 aa2.82□□□□□ -1.96
CLCN4-202ENST00000380833 KRTAP9-9Q9BYP9 154 aa2.78□□□□□ -1.97
CLCN4-202ENST00000380833 RNF213Q63HN8 5207 aa2.76□□□□□ -1.97
CLCN4-202ENST00000380833 UBR4Q5T4S7 5183 aa2.76□□□□□ -1.97
CLCN4-202ENST00000380833 HMCN2Q8NDA2 5059 aa2.75□□□□□ -1.97
CLCN4-202ENST00000380833 KRTAP9-6A8MVA2 160 aa2.74□□□□□ -1.97
CLCN4-202ENST00000380833 KRTAP9-4Q9BYQ2 154 aa2.74□□□□□ -1.97
CLCN4-202ENST00000380833 OBSCNQ5VST9 7968 aa2.7□□□□□ -1.98
CLCN4-202ENST00000380833 KRTAP20-2Q3LI61 65 aa2.61□□□□□ -1.99
CLCN4-202ENST00000380833 KRTAP4-6Q9BYQ5 205 aa2.58□□□□□ -2
CLCN4-202ENST00000380833 KRTAP5-9P26371 169 aa2.57□□□□□ -2
CLCN4-202ENST00000380833 KRTAP4-4Q9BYR3 166 aa2.57□□□□□ -2
CLCN4-202ENST00000380833 KRTAP4-11Q9BYQ6 195 aa2.57□□□□□ -2
CLCN4-202ENST00000380833 NEBP20929 6669 aa2.56□□□□□ -2
CLCN4-202ENST00000380833 KRTAP4-12Q9BQ66 201 aa2.55□□□□□ -2
CLCN4-202ENST00000380833 KRTAP4-2Q9BYR5 136 aa2.55□□□□□ -2
CLCN4-202ENST00000380833 DSTQ03001 7570 aaKnown RBP2.53□□□□□ -2
CLCN4-202ENST00000380833 MACF1Q9UPN3 7388 aaKnown RBP2.48□□□□□ -2.01
CLCN4-202ENST00000380833 KMT2DO14686 5537 aa2.45□□□□□ -2.02
CLCN4-202ENST00000380833 FCGBPQ9Y6R7 5405 aaPredicted RBP2.44□□□□□ -2.02
CLCN4-202ENST00000380833 SSPOA2VEC9 5147 aa2.39□□□□□ -2.03
CLCN4-202ENST00000380833 GPR98Q8WXG9 6306 aa2.38□□□□□ -2.03
CLCN4-202ENST00000380833 USH2AO75445 5202 aa2.34□□□□□ -2.04
CLCN4-202ENST00000380833 KRTAP5-4Q6L8H1 288 aa2.32□□□□□ -2.04
CLCN4-202ENST00000380833 KRTAP5-5Q701N2 237 aaPredicted RBP2.25□□□□□ -2.05
CLCN4-202ENST00000380833 MUC19Q7Z5P9 8384 aa2.21□□□□□ -2.06
CLCN4-202ENST00000380833 KRTAP5-3Q6L8H2 238 aa2.13□□□□□ -2.07
CLCN4-202ENST00000380833 MUC12Q9UKN1 5478 aa2.06□□□□□ -2.08
CLCN4-202ENST00000380833 MDN1Q9NU22 5596 aa2.03□□□□□ -2.08
CLCN4-202ENST00000380833 AHNAK2Q8IVF2 5795 aa1.93□□□□□ -2.1
CLCN4-202ENST00000380833 PHGR1C9JFL3 82 aa1.89□□□□□ -2.11
CLCN4-202ENST00000380833 HMCN1Q96RW7 5635 aa1.88□□□□□ -2.11
CLCN4-202ENST00000380833 MUC5ACP98088 5654 aa1.87□□□□□ -2.11
CLCN4-202ENST00000380833 KRTAP5-8O75690 187 aa1.86□□□□□ -2.11
CLCN4-202ENST00000380833 KRTAP5-2Q701N4 177 aa1.71□□□□□ -2.14
CLCN4-202ENST00000380833 KRTAP5-7Q6L8G8 165 aa1.68□□□□□ -2.14
CLCN4-202ENST00000380833 KRTAP5-10Q6L8G5 202 aa1.65□□□□□ -2.15
CLCN4-202ENST00000380833 KRTAP21-1Q3LI58 79 aa1.59□□□□□ -2.15
CLCN4-202ENST00000380833 AHNAKQ09666 5890 aaKnown RBP1.59□□□□□ -2.15
CLCN4-202ENST00000380833 MUC5BQ9HC84 5762 aaPredicted RBP1.54□□□□□ -2.16
CLCN4-202ENST00000380833 KRTAP5-11Q6L8G4 156 aa1.5□□□□□ -2.17
CLCN4-202ENST00000380833 KRTAP5-1Q6L8H4 278 aa1.41□□□□□ -2.18
CLCN4-202ENST00000380833 KRTAP21-2Q3LI59 83 aa1.34□□□□□ -2.19
CLCN4-202ENST00000380833 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.28□□□□□ -2.21
CLCN4-202ENST00000380833 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 10.5 ms