RNA–Protein interactions for RNA: ENST00000379053.4

LINC00654-201, long intergenic non-protein coding RNA 654, humanhuman

TSL 1 (best) BASIC

Gene LINC00654, Length 6,113 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00654-201ENST00000379053 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.51□□□□□ -1.85
LINC00654-201ENST00000379053 KRTAP2-2Q9BYT5 123 aa3.5□□□□□ -1.85
LINC00654-201ENST00000379053 KRTAP2-1Q9BYU5 128 aa3.5□□□□□ -1.85
LINC00654-201ENST00000379053 TNXBP22105 4242 aa3.5□□□□□ -1.85
LINC00654-201ENST00000379053 KMT2CQ8NEZ4 4911 aaKnown RBP3.49□□□□□ -1.85
LINC00654-201ENST00000379053 SYNE1Q8NF91 8797 aaKnown RBP3.49□□□□□ -1.85
LINC00654-201ENST00000379053 MT1MQ8N339 61 aa3.45□□□□□ -1.86
LINC00654-201ENST00000379053 KRTAP19-2Q3LHN2 52 aa3.43□□□□□ -1.86
LINC00654-201ENST00000379053 LCE2AQ5TA79 106 aaPredicted RBP3.43□□□□□ -1.86
LINC00654-201ENST00000379053 ABCA13Q86UQ4 5058 aa3.41□□□□□ -1.86
LINC00654-201ENST00000379053 LCE1AQ5T7P2 110 aa3.41□□□□□ -1.86
LINC00654-201ENST00000379053 LCE1BQ5T7P3 118 aa3.41□□□□□ -1.86
LINC00654-201ENST00000379053 LCE4AQ5TA78 99 aa3.39□□□□□ -1.87
LINC00654-201ENST00000379053 LCE1DQ5T752 114 aa3.39□□□□□ -1.87
LINC00654-201ENST00000379053 LPAP08519 4548 aa3.37□□□□□ -1.87
LINC00654-201ENST00000379053 FSIP2Q5CZC0 6907 aa3.36□□□□□ -1.87
LINC00654-201ENST00000379053 UBR4Q5T4S7 5183 aa3.35□□□□□ -1.87
LINC00654-201ENST00000379053 LCE5AQ5TCM9 118 aa3.33□□□□□ -1.88
LINC00654-201ENST00000379053 LOC100996750A0A140TA64 210 aa3.33□□□□□ -1.88
LINC00654-201ENST00000379053 KRTAP4-3Q9BYR4 195 aa3.32□□□□□ -1.88
LINC00654-201ENST00000379053 SYNE2Q8WXH0 6885 aaKnown RBP3.32□□□□□ -1.88
LINC00654-201ENST00000379053 MUC17Q685J3 4493 aa3.29□□□□□ -1.88
LINC00654-201ENST00000379053 PRM1P04553 51 aa3.28□□□□□ -1.88
LINC00654-201ENST00000379053 RNF213Q63HN8 5207 aa3.26□□□□□ -1.89
LINC00654-201ENST00000379053 FLGP20930 4061 aaPredicted RBP3.25□□□□□ -1.89
LINC00654-201ENST00000379053 MUC2Q02817 5179 aa3.22□□□□□ -1.89
LINC00654-201ENST00000379053 FAT4Q6V0I7 4981 aa3.21□□□□□ -1.9
LINC00654-201ENST00000379053 MT1AP04731 61 aa3.2□□□□□ -1.9
LINC00654-201ENST00000379053 KRTAP19-7Q3SYF9 63 aa3.16□□□□□ -1.9
LINC00654-201ENST00000379053 KRTAP4-9Q9BYQ8 210 aa3.16□□□□□ -1.9
LINC00654-201ENST00000379053 KRTAP9-9Q9BYP9 154 aa3.14□□□□□ -1.91
LINC00654-201ENST00000379053 LCE1CQ5T751 118 aa3.12□□□□□ -1.91
LINC00654-201ENST00000379053 LCE1EQ5T753 118 aa3.12□□□□□ -1.91
LINC00654-201ENST00000379053 LCE1FQ5T754 118 aa3.12□□□□□ -1.91
LINC00654-201ENST00000379053 OBSCNQ5VST9 7968 aa3.06□□□□□ -1.92
LINC00654-201ENST00000379053 HMCN2Q8NDA2 5059 aa3.03□□□□□ -1.92
LINC00654-201ENST00000379053 GPR98Q8WXG9 6306 aa3.02□□□□□ -1.93
LINC00654-201ENST00000379053 KRTAP6-2Q3LI66 62 aa3□□□□□ -1.93
LINC00654-201ENST00000379053 KRTAP6-1Q3LI64 71 aa2.96□□□□□ -1.93
LINC00654-201ENST00000379053 KRTAP9-4Q9BYQ2 154 aa2.94□□□□□ -1.94
LINC00654-201ENST00000379053 NEBP20929 6669 aa2.92□□□□□ -1.94
LINC00654-201ENST00000379053 MACF1Q9UPN3 7388 aaKnown RBP2.88□□□□□ -1.95
LINC00654-201ENST00000379053 KRTAP9-6A8MVA2 160 aa2.82□□□□□ -1.96
LINC00654-201ENST00000379053 USH2AO75445 5202 aa2.79□□□□□ -1.96
LINC00654-201ENST00000379053 DSTQ03001 7570 aaKnown RBP2.79□□□□□ -1.96
LINC00654-201ENST00000379053 KRTAP5-9P26371 169 aa2.73□□□□□ -1.97
LINC00654-201ENST00000379053 FCGBPQ9Y6R7 5405 aaPredicted RBP2.71□□□□□ -1.98
LINC00654-201ENST00000379053 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
LINC00654-201ENST00000379053 KMT2DO14686 5537 aa2.66□□□□□ -1.98
LINC00654-201ENST00000379053 MDN1Q9NU22 5596 aa2.58□□□□□ -2
LINC00654-201ENST00000379053 SSPOA2VEC9 5147 aa2.58□□□□□ -2
LINC00654-201ENST00000379053 KRTAP20-2Q3LI61 65 aa2.56□□□□□ -2
LINC00654-201ENST00000379053 KRTAP4-6Q9BYQ5 205 aa2.54□□□□□ -2
LINC00654-201ENST00000379053 KRTAP5-4Q6L8H1 288 aa2.5□□□□□ -2.01
LINC00654-201ENST00000379053 KRTAP4-11Q9BYQ6 195 aa2.43□□□□□ -2.02
LINC00654-201ENST00000379053 AHNAK2Q8IVF2 5795 aa2.36□□□□□ -2.03
LINC00654-201ENST00000379053 MUC12Q9UKN1 5478 aa2.36□□□□□ -2.03
LINC00654-201ENST00000379053 KRTAP4-12Q9BQ66 201 aa2.36□□□□□ -2.03
LINC00654-201ENST00000379053 KRTAP4-2Q9BYR5 136 aa2.36□□□□□ -2.03
LINC00654-201ENST00000379053 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
LINC00654-201ENST00000379053 KRTAP5-3Q6L8H2 238 aa2.32□□□□□ -2.04
LINC00654-201ENST00000379053 HMCN1Q96RW7 5635 aa2.26□□□□□ -2.05
LINC00654-201ENST00000379053 KRTAP5-5Q701N2 237 aaPredicted RBP2.13□□□□□ -2.07
LINC00654-201ENST00000379053 PHGR1C9JFL3 82 aa2.11□□□□□ -2.07
LINC00654-201ENST00000379053 MUC5ACP98088 5654 aa2.1□□□□□ -2.07
LINC00654-201ENST00000379053 KRTAP5-8O75690 187 aa2.01□□□□□ -2.09
LINC00654-201ENST00000379053 AHNAKQ09666 5890 aaKnown RBP1.93□□□□□ -2.1
LINC00654-201ENST00000379053 MUC5BQ9HC84 5762 aaPredicted RBP1.89□□□□□ -2.11
LINC00654-201ENST00000379053 KRTAP5-7Q6L8G8 165 aa1.8□□□□□ -2.12
LINC00654-201ENST00000379053 KRTAP5-10Q6L8G5 202 aa1.68□□□□□ -2.14
LINC00654-201ENST00000379053 KRTAP5-2Q701N4 177 aa1.65□□□□□ -2.15
LINC00654-201ENST00000379053 KRTAP5-11Q6L8G4 156 aa1.62□□□□□ -2.15
LINC00654-201ENST00000379053 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
LINC00654-201ENST00000379053 KRTAP5-1Q6L8H4 278 aa1.52□□□□□ -2.17
LINC00654-201ENST00000379053 KRTAP21-2Q3LI59 83 aa1.5□□□□□ -2.17
LINC00654-201ENST00000379053 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.31□□□□□ -2.2
LINC00654-201ENST00000379053 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 63.9 ms