RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 KRTAP19-3Q7Z4W3 81 aa3.41□□□□□ -1.86
RTN3-206ENST00000377819 KRTAP4-8A0A0G2JLE6 195 aa3.39□□□□□ -1.87
RTN3-206ENST00000377819 KRTAP4-8Q9BYQ9 185 aa3.39□□□□□ -1.87
RTN3-206ENST00000377819 MT1LQ93083 61 aa3.39□□□□□ -1.87
RTN3-206ENST00000377819 MT4P47944 62 aa3.38□□□□□ -1.87
RTN3-206ENST00000377819 PRM1P04553 51 aa3.36□□□□□ -1.87
RTN3-206ENST00000377819 MT1BP07438 61 aa3.34□□□□□ -1.87
RTN3-206ENST00000377819 KRTAP9-3Q9BYQ3 159 aa3.29□□□□□ -1.88
RTN3-206ENST00000377819 LCE5AQ5TCM9 118 aa3.29□□□□□ -1.88
RTN3-206ENST00000377819 MUC19Q7Z5P9 8384 aa3.23□□□□□ -1.89
RTN3-206ENST00000377819 SSPOA2VEC9 5147 aa3.23□□□□□ -1.89
RTN3-206ENST00000377819 MACF1Q9UPN3 7388 aaKnown RBP3.22□□□□□ -1.89
RTN3-206ENST00000377819 MT1EP04732 61 aa3.19□□□□□ -1.9
RTN3-206ENST00000377819 USH2AO75445 5202 aa3.19□□□□□ -1.9
RTN3-206ENST00000377819 GPR98Q8WXG9 6306 aa3.18□□□□□ -1.9
RTN3-206ENST00000377819 KRTAP4-7Q9BYR0 210 aa3.17□□□□□ -1.9
RTN3-206ENST00000377819 MT1MQ8N339 61 aa3.16□□□□□ -1.9
RTN3-206ENST00000377819 DSTQ03001 7570 aaKnown RBP3.14□□□□□ -1.91
RTN3-206ENST00000377819 LCE1CQ5T751 118 aa3.14□□□□□ -1.91
RTN3-206ENST00000377819 LCE1EQ5T753 118 aa3.14□□□□□ -1.91
RTN3-206ENST00000377819 LCE1FQ5T754 118 aa3.14□□□□□ -1.91
RTN3-206ENST00000377819 LCE1AQ5T7P2 110 aa3.14□□□□□ -1.91
RTN3-206ENST00000377819 MT1AP04731 61 aa3.05□□□□□ -1.92
RTN3-206ENST00000377819 KRTAP20-1Q3LI63 56 aa3.01□□□□□ -1.93
RTN3-206ENST00000377819 KRTAP19-6Q3LI70 58 aa2.98□□□□□ -1.93
RTN3-206ENST00000377819 FSIP2Q5CZC0 6907 aa2.98□□□□□ -1.93
RTN3-206ENST00000377819 KRTAP9-2Q9BYQ4 174 aa2.97□□□□□ -1.93
RTN3-206ENST00000377819 LOC100996750A0A140TA64 210 aa2.96□□□□□ -1.93
RTN3-206ENST00000377819 KRTAP2-3P0C7H8 128 aa2.95□□□□□ -1.94
RTN3-206ENST00000377819 KRTAP2-4Q9BYR9 128 aa2.95□□□□□ -1.94
RTN3-206ENST00000377819 KRTAP2-1Q9BYU5 128 aa2.95□□□□□ -1.94
RTN3-206ENST00000377819 KRTAP4-3Q9BYR4 195 aa2.92□□□□□ -1.94
RTN3-206ENST00000377819 SYNE2Q8WXH0 6885 aaKnown RBP2.91□□□□□ -1.94
RTN3-206ENST00000377819 KRTAP9-6A0A140TA67 174 aa2.9□□□□□ -1.94
RTN3-206ENST00000377819 KRTAP4-9Q9BYQ8 210 aa2.87□□□□□ -1.95
RTN3-206ENST00000377819 KRTAP19-7Q3SYF9 63 aa2.84□□□□□ -1.95
RTN3-206ENST00000377819 KRTAP9-7A8MTY7 169 aa2.83□□□□□ -1.96
RTN3-206ENST00000377819 LCE4AQ5TA78 99 aa2.82□□□□□ -1.96
RTN3-206ENST00000377819 FCGBPQ9Y6R7 5405 aaPredicted RBP2.82□□□□□ -1.96
RTN3-206ENST00000377819 KRTAP6-2Q3LI66 62 aa2.82□□□□□ -1.96
RTN3-206ENST00000377819 KRTAP2-2Q9BYT5 123 aa2.82□□□□□ -1.96
RTN3-206ENST00000377819 KMT2DO14686 5537 aa2.8□□□□□ -1.96
RTN3-206ENST00000377819 KRTAP5-9P26371 169 aa2.72□□□□□ -1.97
RTN3-206ENST00000377819 KRTAP6-3Q3LI67 103 aa2.72□□□□□ -1.97
RTN3-206ENST00000377819 KRTAP9-4Q9BYQ2 154 aa2.72□□□□□ -1.97
RTN3-206ENST00000377819 MUC12Q9UKN1 5478 aa2.72□□□□□ -1.97
RTN3-206ENST00000377819 KRTAP9-9Q9BYP9 154 aa2.71□□□□□ -1.98
RTN3-206ENST00000377819 KRTAP6-1Q3LI64 71 aa2.67□□□□□ -1.98
RTN3-206ENST00000377819 KRTAP9-6A8MVA2 160 aa2.64□□□□□ -1.99
RTN3-206ENST00000377819 KRTAP5-5Q701N2 237 aaPredicted RBP2.58□□□□□ -2
RTN3-206ENST00000377819 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.52□□□□□ -2.01
RTN3-206ENST00000377819 MDN1Q9NU22 5596 aa2.5□□□□□ -2.01
RTN3-206ENST00000377819 KRTAP20-2Q3LI61 65 aa2.44□□□□□ -2.02
RTN3-206ENST00000377819 KRTAP4-11Q9BYQ6 195 aa2.43□□□□□ -2.02
RTN3-206ENST00000377819 NEBP20929 6669 aa2.42□□□□□ -2.02
RTN3-206ENST00000377819 KRTAP5-4Q6L8H1 288 aa2.39□□□□□ -2.03
RTN3-206ENST00000377819 KRTAP5-2Q701N4 177 aa2.24□□□□□ -2.05
RTN3-206ENST00000377819 KRTAP4-4Q9BYR3 166 aa2.23□□□□□ -2.05
RTN3-206ENST00000377819 KRTAP4-12Q9BQ66 201 aa2.21□□□□□ -2.06
RTN3-206ENST00000377819 KRTAP4-2Q9BYR5 136 aa2.21□□□□□ -2.06
RTN3-206ENST00000377819 KRTAP4-6Q9BYQ5 205 aa2.16□□□□□ -2.06
RTN3-206ENST00000377819 KRTAP5-3Q6L8H2 238 aa2.13□□□□□ -2.07
RTN3-206ENST00000377819 AHNAK2Q8IVF2 5795 aa2.09□□□□□ -2.08
RTN3-206ENST00000377819 HMCN1Q96RW7 5635 aa2.05□□□□□ -2.08
RTN3-206ENST00000377819 MUC5ACP98088 5654 aa1.97□□□□□ -2.09
RTN3-206ENST00000377819 KRTAP5-7Q6L8G8 165 aa1.95□□□□□ -2.1
RTN3-206ENST00000377819 KRTAP5-10Q6L8G5 202 aa1.93□□□□□ -2.1
RTN3-206ENST00000377819 KRTAP5-1Q6L8H4 278 aa1.85□□□□□ -2.11
RTN3-206ENST00000377819 KRTAP5-8O75690 187 aa1.84□□□□□ -2.12
RTN3-206ENST00000377819 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.83□□□□□ -2.12
RTN3-206ENST00000377819 PHGR1C9JFL3 82 aa1.77□□□□□ -2.13
RTN3-206ENST00000377819 MUC5BQ9HC84 5762 aaPredicted RBP1.66□□□□□ -2.14
RTN3-206ENST00000377819 AHNAKQ09666 5890 aaKnown RBP1.66□□□□□ -2.14
RTN3-206ENST00000377819 KRTAP21-2Q3LI59 83 aa1.61□□□□□ -2.15
RTN3-206ENST00000377819 KRTAP5-11Q6L8G4 156 aa1.55□□□□□ -2.16
RTN3-206ENST00000377819 KRTAP21-1Q3LI58 79 aa1.4□□□□□ -2.19
RTN3-206ENST00000377819 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 553.6 ms