RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 HYDINQ4G0P3 5121 aa3.52□□□□□ -1.85
VPS13A-204ENST00000376634 MT1AP04731 61 aa3.51□□□□□ -1.85
VPS13A-204ENST00000376634 LRP2P98164 4655 aa3.5□□□□□ -1.85
VPS13A-204ENST00000376634 KRTAP20-1Q3LI63 56 aa3.5□□□□□ -1.85
VPS13A-204ENST00000376634 KRTAP4-9Q9BYQ8 210 aa3.47□□□□□ -1.85
VPS13A-204ENST00000376634 KRTAP19-2Q3LHN2 52 aa3.46□□□□□ -1.85
VPS13A-204ENST00000376634 KIAA1109Q2LD37 5005 aa3.45□□□□□ -1.86
VPS13A-204ENST00000376634 LCE1CQ5T751 118 aa3.42□□□□□ -1.86
VPS13A-204ENST00000376634 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
VPS13A-204ENST00000376634 LCE1FQ5T754 118 aa3.42□□□□□ -1.86
VPS13A-204ENST00000376634 LCE1AQ5T7P2 110 aa3.42□□□□□ -1.86
VPS13A-204ENST00000376634 PCLOQ9Y6V0 5065 aa3.41□□□□□ -1.86
VPS13A-204ENST00000376634 HERC1Q15751 4861 aa3.4□□□□□ -1.86
VPS13A-204ENST00000376634 KRTAP6-2Q3LI66 62 aa3.39□□□□□ -1.87
VPS13A-204ENST00000376634 KRTAP9-6A0A140TA67 174 aa3.38□□□□□ -1.87
VPS13A-204ENST00000376634 KRTAP19-7Q3SYF9 63 aa3.35□□□□□ -1.87
VPS13A-204ENST00000376634 SYNE2Q8WXH0 6885 aaKnown RBP3.31□□□□□ -1.88
VPS13A-204ENST00000376634 KMT2CQ8NEZ4 4911 aaKnown RBP3.31□□□□□ -1.88
VPS13A-204ENST00000376634 BIRC6Q9NR09 4857 aa3.31□□□□□ -1.88
VPS13A-204ENST00000376634 EPPK1P58107 5090 aaKnown RBP3.28□□□□□ -1.88
VPS13A-204ENST00000376634 KRTAP6-1Q3LI64 71 aa3.27□□□□□ -1.89
VPS13A-204ENST00000376634 ABCA13Q86UQ4 5058 aa3.27□□□□□ -1.89
VPS13A-204ENST00000376634 LCE4AQ5TA78 99 aa3.27□□□□□ -1.89
VPS13A-204ENST00000376634 HERC2O95714 4834 aa3.25□□□□□ -1.89
VPS13A-204ENST00000376634 KRTAP9-7A8MTY7 169 aa3.24□□□□□ -1.89
VPS13A-204ENST00000376634 KRTAP9-4Q9BYQ2 154 aa3.23□□□□□ -1.89
VPS13A-204ENST00000376634 KRTAP6-3Q3LI67 103 aa3.16□□□□□ -1.9
VPS13A-204ENST00000376634 LCE2AQ5TA79 106 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-204ENST00000376634 KRTAP9-9Q9BYP9 154 aa3.09□□□□□ -1.91
VPS13A-204ENST00000376634 KRTAP2-2Q9BYT5 123 aa3.08□□□□□ -1.92
VPS13A-204ENST00000376634 KRTAP9-6A8MVA2 160 aa3.08□□□□□ -1.92
VPS13A-204ENST00000376634 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-204ENST00000376634 HMCN2Q8NDA2 5059 aa3.03□□□□□ -1.92
VPS13A-204ENST00000376634 FAT4Q6V0I7 4981 aa3□□□□□ -1.93
VPS13A-204ENST00000376634 UBR4Q5T4S7 5183 aa2.99□□□□□ -1.93
VPS13A-204ENST00000376634 FSIP2Q5CZC0 6907 aa2.96□□□□□ -1.93
VPS13A-204ENST00000376634 RNF213Q63HN8 5207 aa2.87□□□□□ -1.95
VPS13A-204ENST00000376634 KRTAP4-11Q9BYQ6 195 aa2.83□□□□□ -1.96
VPS13A-204ENST00000376634 OBSCNQ5VST9 7968 aa2.74□□□□□ -1.97
VPS13A-204ENST00000376634 MUC2Q02817 5179 aa2.72□□□□□ -1.97
VPS13A-204ENST00000376634 KRTAP20-2Q3LI61 65 aa2.71□□□□□ -1.98
VPS13A-204ENST00000376634 SYNE1Q8NF91 8797 aaKnown RBP2.69□□□□□ -1.98
VPS13A-204ENST00000376634 KRTAP4-6Q9BYQ5 205 aa2.63□□□□□ -1.99
VPS13A-204ENST00000376634 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
VPS13A-204ENST00000376634 DSTQ03001 7570 aaKnown RBP2.6□□□□□ -1.99
VPS13A-204ENST00000376634 MACF1Q9UPN3 7388 aaKnown RBP2.56□□□□□ -2
VPS13A-204ENST00000376634 KRTAP5-9P26371 169 aa2.54□□□□□ -2
VPS13A-204ENST00000376634 USH2AO75445 5202 aa2.52□□□□□ -2.01
VPS13A-204ENST00000376634 KRTAP4-12Q9BQ66 201 aa2.51□□□□□ -2.01
VPS13A-204ENST00000376634 KRTAP4-2Q9BYR5 136 aa2.51□□□□□ -2.01
VPS13A-204ENST00000376634 KRTAP5-4Q6L8H1 288 aa2.45□□□□□ -2.02
VPS13A-204ENST00000376634 KMT2DO14686 5537 aa2.43□□□□□ -2.02
VPS13A-204ENST00000376634 FCGBPQ9Y6R7 5405 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-204ENST00000376634 NEBP20929 6669 aa2.34□□□□□ -2.04
VPS13A-204ENST00000376634 KRTAP5-5Q701N2 237 aaPredicted RBP2.32□□□□□ -2.04
VPS13A-204ENST00000376634 SSPOA2VEC9 5147 aa2.3□□□□□ -2.04
VPS13A-204ENST00000376634 MUC12Q9UKN1 5478 aa2.16□□□□□ -2.06
VPS13A-204ENST00000376634 MDN1Q9NU22 5596 aa2.15□□□□□ -2.07
VPS13A-204ENST00000376634 KRTAP5-3Q6L8H2 238 aa2.1□□□□□ -2.07
VPS13A-204ENST00000376634 MUC5ACP98088 5654 aa2□□□□□ -2.09
VPS13A-204ENST00000376634 PHGR1C9JFL3 82 aa1.96□□□□□ -2.1
VPS13A-204ENST00000376634 GPR98Q8WXG9 6306 aa1.92□□□□□ -2.1
VPS13A-204ENST00000376634 MUC19Q7Z5P9 8384 aa1.86□□□□□ -2.11
VPS13A-204ENST00000376634 KRTAP5-8O75690 187 aa1.85□□□□□ -2.11
VPS13A-204ENST00000376634 KRTAP5-10Q6L8G5 202 aa1.85□□□□□ -2.11
VPS13A-204ENST00000376634 MUC5BQ9HC84 5762 aaPredicted RBP1.81□□□□□ -2.12
VPS13A-204ENST00000376634 HMCN1Q96RW7 5635 aa1.76□□□□□ -2.13
VPS13A-204ENST00000376634 KRTAP5-2Q701N4 177 aa1.73□□□□□ -2.13
VPS13A-204ENST00000376634 KRTAP5-11Q6L8G4 156 aa1.66□□□□□ -2.14
VPS13A-204ENST00000376634 KRTAP5-1Q6L8H4 278 aa1.65□□□□□ -2.14
VPS13A-204ENST00000376634 AHNAK2Q8IVF2 5795 aa1.54□□□□□ -2.16
VPS13A-204ENST00000376634 KRTAP21-2Q3LI59 83 aa1.52□□□□□ -2.17
VPS13A-204ENST00000376634 AHNAKQ09666 5890 aaKnown RBP1.52□□□□□ -2.17
VPS13A-204ENST00000376634 KRTAP21-1Q3LI58 79 aa1.51□□□□□ -2.17
VPS13A-204ENST00000376634 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.35□□□□□ -2.19
VPS13A-204ENST00000376634 KRTAP5-7Q6L8G8 165 aa1.18□□□□□ -2.22
VPS13A-204ENST00000376634 MUC16Q8WXI7 14507 aa1.16□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 58.4 ms