RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 KRTAP19-6Q3LI70 58 aa3.9□□□□□ -1.78
SYNE1-204ENST00000367248 MUC2Q02817 5179 aa3.88□□□□□ -1.79
SYNE1-204ENST00000367248 TNXBP22105 4242 aa3.86□□□□□ -1.79
SYNE1-204ENST00000367248 MT1LQ93083 61 aa3.86□□□□□ -1.79
SYNE1-204ENST00000367248 MT1EP04732 61 aa3.86□□□□□ -1.79
SYNE1-204ENST00000367248 SPRR5A0A1B0GTR4 108 aa3.85□□□□□ -1.79
SYNE1-204ENST00000367248 KRTAP9-7A8MTY7 169 aa3.75□□□□□ -1.81
SYNE1-204ENST00000367248 SYNE2Q8WXH0 6885 aaKnown RBP3.75□□□□□ -1.81
SYNE1-204ENST00000367248 MT1MQ8N339 61 aa3.74□□□□□ -1.81
SYNE1-204ENST00000367248 KRTAP4-3Q9BYR4 195 aa3.73□□□□□ -1.81
SYNE1-204ENST00000367248 FLGP20930 4061 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-204ENST00000367248 LCE3DQ9BYE3 92 aa3.71□□□□□ -1.82
SYNE1-204ENST00000367248 LOC100996750A0A140TA64 210 aa3.7□□□□□ -1.82
SYNE1-204ENST00000367248 KRTAP20-1Q3LI63 56 aa3.69□□□□□ -1.82
SYNE1-204ENST00000367248 LCE1BQ5T7P3 118 aa3.65□□□□□ -1.83
SYNE1-204ENST00000367248 KRTAP19-7Q3SYF9 63 aa3.64□□□□□ -1.83
SYNE1-204ENST00000367248 LCE3EQ5T5B0 92 aa3.64□□□□□ -1.83
SYNE1-204ENST00000367248 USH2AO75445 5202 aa3.64□□□□□ -1.83
SYNE1-204ENST00000367248 LCE1DQ5T752 114 aa3.62□□□□□ -1.83
SYNE1-204ENST00000367248 MT3P25713 68 aa3.57□□□□□ -1.84
SYNE1-204ENST00000367248 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.55□□□□□ -1.84
SYNE1-204ENST00000367248 OBSCNQ5VST9 7968 aa3.55□□□□□ -1.84
SYNE1-204ENST00000367248 KRTAP4-9Q9BYQ8 210 aa3.54□□□□□ -1.84
SYNE1-204ENST00000367248 KRTAP6-3Q3LI67 103 aa3.48□□□□□ -1.85
SYNE1-204ENST00000367248 MT1AP04731 61 aa3.47□□□□□ -1.85
SYNE1-204ENST00000367248 LCE1AQ5T7P2 110 aa3.46□□□□□ -1.86
SYNE1-204ENST00000367248 KRTAP2-3P0C7H8 128 aa3.44□□□□□ -1.86
SYNE1-204ENST00000367248 KRTAP2-4Q9BYR9 128 aa3.44□□□□□ -1.86
SYNE1-204ENST00000367248 LCE5AQ5TCM9 118 aa3.44□□□□□ -1.86
SYNE1-204ENST00000367248 KMT2DO14686 5537 aa3.4□□□□□ -1.86
SYNE1-204ENST00000367248 FCGBPQ9Y6R7 5405 aaPredicted RBP3.37□□□□□ -1.87
SYNE1-204ENST00000367248 SSPOA2VEC9 5147 aa3.35□□□□□ -1.87
SYNE1-204ENST00000367248 DSTQ03001 7570 aaKnown RBP3.34□□□□□ -1.87
SYNE1-204ENST00000367248 KRTAP2-2Q9BYT5 123 aa3.33□□□□□ -1.88
SYNE1-204ENST00000367248 KRTAP2-1Q9BYU5 128 aa3.33□□□□□ -1.88
SYNE1-204ENST00000367248 MACF1Q9UPN3 7388 aaKnown RBP3.32□□□□□ -1.88
SYNE1-204ENST00000367248 PRM1P04553 51 aa3.3□□□□□ -1.88
SYNE1-204ENST00000367248 MDN1Q9NU22 5596 aa3.28□□□□□ -1.88
SYNE1-204ENST00000367248 KRTAP6-2Q3LI66 62 aa3.24□□□□□ -1.89
SYNE1-204ENST00000367248 KRTAP9-6A8MVA2 160 aa3.24□□□□□ -1.89
SYNE1-204ENST00000367248 NEBP20929 6669 aa3.24□□□□□ -1.89
SYNE1-204ENST00000367248 KRTAP6-1Q3LI64 71 aa3.23□□□□□ -1.89
SYNE1-204ENST00000367248 LCE4AQ5TA78 99 aa3.2□□□□□ -1.9
SYNE1-204ENST00000367248 LCE1CQ5T751 118 aa3.16□□□□□ -1.9
SYNE1-204ENST00000367248 LCE1EQ5T753 118 aa3.16□□□□□ -1.9
SYNE1-204ENST00000367248 LCE1FQ5T754 118 aa3.16□□□□□ -1.9
SYNE1-204ENST00000367248 KRTAP9-4Q9BYQ2 154 aa3.15□□□□□ -1.9
SYNE1-204ENST00000367248 GPR98Q8WXG9 6306 aa3.14□□□□□ -1.91
SYNE1-204ENST00000367248 MUC12Q9UKN1 5478 aa3.08□□□□□ -1.92
SYNE1-204ENST00000367248 KRTAP5-9P26371 169 aa3.04□□□□□ -1.92
SYNE1-204ENST00000367248 MUC19Q7Z5P9 8384 aa2.98□□□□□ -1.93
SYNE1-204ENST00000367248 KRTAP9-9Q9BYP9 154 aa2.95□□□□□ -1.94
SYNE1-204ENST00000367248 KRTAP4-6Q9BYQ5 205 aa2.91□□□□□ -1.94
SYNE1-204ENST00000367248 KRTAP20-2Q3LI61 65 aa2.76□□□□□ -1.97
SYNE1-204ENST00000367248 AHNAK2Q8IVF2 5795 aa2.67□□□□□ -1.98
SYNE1-204ENST00000367248 KRTAP4-12Q9BQ66 201 aa2.67□□□□□ -1.98
SYNE1-204ENST00000367248 KRTAP4-2Q9BYR5 136 aa2.67□□□□□ -1.98
SYNE1-204ENST00000367248 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
SYNE1-204ENST00000367248 HMCN1Q96RW7 5635 aa2.57□□□□□ -2
SYNE1-204ENST00000367248 KRTAP5-4Q6L8H1 288 aa2.56□□□□□ -2
SYNE1-204ENST00000367248 KRTAP4-11Q9BYQ6 195 aa2.52□□□□□ -2.01
SYNE1-204ENST00000367248 MUC5ACP98088 5654 aa2.51□□□□□ -2.01
SYNE1-204ENST00000367248 KRTAP5-5Q701N2 237 aaPredicted RBP2.48□□□□□ -2.01
SYNE1-204ENST00000367248 KRTAP5-3Q6L8H2 238 aa2.36□□□□□ -2.03
SYNE1-204ENST00000367248 AHNAKQ09666 5890 aaKnown RBP2.22□□□□□ -2.05
SYNE1-204ENST00000367248 KRTAP5-8O75690 187 aa2.18□□□□□ -2.06
SYNE1-204ENST00000367248 KRTAP5-2Q701N4 177 aa2.09□□□□□ -2.07
SYNE1-204ENST00000367248 PHGR1C9JFL3 82 aa2.04□□□□□ -2.08
SYNE1-204ENST00000367248 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
SYNE1-204ENST00000367248 KRTAP5-10Q6L8G5 202 aa1.94□□□□□ -2.1
SYNE1-204ENST00000367248 KRTAP5-1Q6L8H4 278 aa1.85□□□□□ -2.11
SYNE1-204ENST00000367248 KRTAP5-11Q6L8G4 156 aa1.84□□□□□ -2.12
SYNE1-204ENST00000367248 KRTAP21-2Q3LI59 83 aa1.71□□□□□ -2.14
SYNE1-204ENST00000367248 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.65□□□□□ -2.15
SYNE1-204ENST00000367248 KRTAP5-7Q6L8G8 165 aa1.63□□□□□ -2.15
SYNE1-204ENST00000367248 KRTAP21-1Q3LI58 79 aa1.39□□□□□ -2.19
SYNE1-204ENST00000367248 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 37.7 ms