RNA–Protein interactions for RNA: ENST00000360413.7

SRGAP3-201, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best) BASIC

Gene SRGAP3, Length 8,415 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-201ENST00000360413 MT1AP04731 61 aa3.75□□□□□ -1.81
SRGAP3-201ENST00000360413 KRTAP20-1Q3LI63 56 aa3.74□□□□□ -1.81
SRGAP3-201ENST00000360413 RYR3Q15413 4870 aa3.68□□□□□ -1.82
SRGAP3-201ENST00000360413 LCE1AQ5T7P2 110 aa3.67□□□□□ -1.82
SRGAP3-201ENST00000360413 KRTAP6-2Q3LI66 62 aa3.66□□□□□ -1.82
SRGAP3-201ENST00000360413 LCE4AQ5TA78 99 aa3.64□□□□□ -1.83
SRGAP3-201ENST00000360413 KRTAP9-7A8MTY7 169 aa3.59□□□□□ -1.83
SRGAP3-201ENST00000360413 LCE1CQ5T751 118 aa3.59□□□□□ -1.83
SRGAP3-201ENST00000360413 LCE1EQ5T753 118 aa3.59□□□□□ -1.83
SRGAP3-201ENST00000360413 LCE1FQ5T754 118 aa3.59□□□□□ -1.83
SRGAP3-201ENST00000360413 KRTAP19-2Q3LHN2 52 aa3.58□□□□□ -1.84
SRGAP3-201ENST00000360413 KMT2CQ8NEZ4 4911 aaKnown RBP3.54□□□□□ -1.84
SRGAP3-201ENST00000360413 MUC17Q685J3 4493 aa3.52□□□□□ -1.85
SRGAP3-201ENST00000360413 KRTAP19-7Q3SYF9 63 aa3.51□□□□□ -1.85
SRGAP3-201ENST00000360413 SYNE2Q8WXH0 6885 aaKnown RBP3.5□□□□□ -1.85
SRGAP3-201ENST00000360413 KRTAP6-3Q3LI67 103 aa3.45□□□□□ -1.86
SRGAP3-201ENST00000360413 KRTAP9-4Q9BYQ2 154 aa3.43□□□□□ -1.86
SRGAP3-201ENST00000360413 HYDINQ4G0P3 5121 aa3.42□□□□□ -1.86
SRGAP3-201ENST00000360413 KRTAP6-1Q3LI64 71 aa3.41□□□□□ -1.86
SRGAP3-201ENST00000360413 KRTAP9-6A8MVA2 160 aa3.41□□□□□ -1.86
SRGAP3-201ENST00000360413 RYR2Q92736 4967 aa3.39□□□□□ -1.87
SRGAP3-201ENST00000360413 KRTAP2-2Q9BYT5 123 aa3.39□□□□□ -1.87
SRGAP3-201ENST00000360413 KRTAP9-9Q9BYP9 154 aa3.37□□□□□ -1.87
SRGAP3-201ENST00000360413 HERC2O95714 4834 aa3.35□□□□□ -1.87
SRGAP3-201ENST00000360413 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.31□□□□□ -1.88
SRGAP3-201ENST00000360413 SYNE1Q8NF91 8797 aaKnown RBP3.28□□□□□ -1.88
SRGAP3-201ENST00000360413 LCE2AQ5TA79 106 aaPredicted RBP3.26□□□□□ -1.89
SRGAP3-201ENST00000360413 PCLOQ9Y6V0 5065 aa3.24□□□□□ -1.89
SRGAP3-201ENST00000360413 HMCN2Q8NDA2 5059 aa3.19□□□□□ -1.9
SRGAP3-201ENST00000360413 KIAA1109Q2LD37 5005 aa3.18□□□□□ -1.9
SRGAP3-201ENST00000360413 BIRC6Q9NR09 4857 aa3.18□□□□□ -1.9
SRGAP3-201ENST00000360413 KRTAP4-11Q9BYQ6 195 aa3.12□□□□□ -1.91
SRGAP3-201ENST00000360413 HERC1Q15751 4861 aa3.09□□□□□ -1.92
SRGAP3-201ENST00000360413 FSIP2Q5CZC0 6907 aa3.01□□□□□ -1.93
SRGAP3-201ENST00000360413 OBSCNQ5VST9 7968 aa2.97□□□□□ -1.93
SRGAP3-201ENST00000360413 MUC2Q02817 5179 aa2.85□□□□□ -1.95
SRGAP3-201ENST00000360413 UBR4Q5T4S7 5183 aa2.84□□□□□ -1.95
SRGAP3-201ENST00000360413 EPPK1P58107 5090 aaKnown RBP2.84□□□□□ -1.96
SRGAP3-201ENST00000360413 KRTAP20-2Q3LI61 65 aa2.78□□□□□ -1.96
SRGAP3-201ENST00000360413 FAT4Q6V0I7 4981 aa2.78□□□□□ -1.96
SRGAP3-201ENST00000360413 ABCA13Q86UQ4 5058 aa2.78□□□□□ -1.96
SRGAP3-201ENST00000360413 RNF213Q63HN8 5207 aa2.77□□□□□ -1.97
SRGAP3-201ENST00000360413 KRTAP5-9P26371 169 aa2.73□□□□□ -1.97
SRGAP3-201ENST00000360413 KRTAP4-4Q9BYR3 166 aa2.72□□□□□ -1.97
SRGAP3-201ENST00000360413 KMT2DO14686 5537 aa2.71□□□□□ -1.98
SRGAP3-201ENST00000360413 KRTAP4-6Q9BYQ5 205 aa2.69□□□□□ -1.98
SRGAP3-201ENST00000360413 DSTQ03001 7570 aaKnown RBP2.68□□□□□ -1.98
SRGAP3-201ENST00000360413 FCGBPQ9Y6R7 5405 aaPredicted RBP2.67□□□□□ -1.98
SRGAP3-201ENST00000360413 KRTAP5-5Q701N2 237 aaPredicted RBP2.63□□□□□ -1.99
SRGAP3-201ENST00000360413 KRTAP5-4Q6L8H1 288 aa2.61□□□□□ -1.99
SRGAP3-201ENST00000360413 KRTAP4-12Q9BQ66 201 aa2.6□□□□□ -1.99
SRGAP3-201ENST00000360413 KRTAP4-2Q9BYR5 136 aa2.6□□□□□ -1.99
SRGAP3-201ENST00000360413 NEBP20929 6669 aa2.56□□□□□ -2
SRGAP3-201ENST00000360413 MUC19Q7Z5P9 8384 aa2.52□□□□□ -2.01
SRGAP3-201ENST00000360413 MACF1Q9UPN3 7388 aaKnown RBP2.5□□□□□ -2.01
SRGAP3-201ENST00000360413 USH2AO75445 5202 aa2.4□□□□□ -2.02
SRGAP3-201ENST00000360413 MDN1Q9NU22 5596 aa2.35□□□□□ -2.03
SRGAP3-201ENST00000360413 SSPOA2VEC9 5147 aa2.35□□□□□ -2.03
SRGAP3-201ENST00000360413 GPR98Q8WXG9 6306 aa2.27□□□□□ -2.05
SRGAP3-201ENST00000360413 KRTAP5-3Q6L8H2 238 aa2.26□□□□□ -2.05
SRGAP3-201ENST00000360413 MUC5ACP98088 5654 aa2.26□□□□□ -2.05
SRGAP3-201ENST00000360413 MUC12Q9UKN1 5478 aa2.18□□□□□ -2.06
SRGAP3-201ENST00000360413 PHGR1C9JFL3 82 aa2.12□□□□□ -2.07
SRGAP3-201ENST00000360413 KRTAP5-10Q6L8G5 202 aa2.02□□□□□ -2.09
SRGAP3-201ENST00000360413 KRTAP5-2Q701N4 177 aa1.98□□□□□ -2.09
SRGAP3-201ENST00000360413 KRTAP5-8O75690 187 aa1.97□□□□□ -2.09
SRGAP3-201ENST00000360413 MUC5BQ9HC84 5762 aaPredicted RBP1.97□□□□□ -2.09
SRGAP3-201ENST00000360413 HMCN1Q96RW7 5635 aa1.91□□□□□ -2.1
SRGAP3-201ENST00000360413 KRTAP5-11Q6L8G4 156 aa1.84□□□□□ -2.12
SRGAP3-201ENST00000360413 AHNAK2Q8IVF2 5795 aa1.83□□□□□ -2.12
SRGAP3-201ENST00000360413 AHNAKQ09666 5890 aaKnown RBP1.78□□□□□ -2.12
SRGAP3-201ENST00000360413 KRTAP5-1Q6L8H4 278 aa1.73□□□□□ -2.13
SRGAP3-201ENST00000360413 KRTAP21-1Q3LI58 79 aa1.71□□□□□ -2.14
SRGAP3-201ENST00000360413 KRTAP21-2Q3LI59 83 aa1.61□□□□□ -2.15
SRGAP3-201ENST00000360413 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.53□□□□□ -2.16
SRGAP3-201ENST00000360413 KRTAP5-7Q6L8G8 165 aa1.44□□□□□ -2.18
SRGAP3-201ENST00000360413 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 1052.7 ms