RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 LRP2P98164 4655 aa4.83□□□□□ -1.64
COL18A1-203ENST00000359759 ABCA13Q86UQ4 5058 aa4.82□□□□□ -1.64
COL18A1-203ENST00000359759 EPPK1P58107 5090 aaKnown RBP4.81□□□□□ -1.64
COL18A1-203ENST00000359759 KMT2CQ8NEZ4 4911 aaKnown RBP4.8□□□□□ -1.64
COL18A1-203ENST00000359759 TNXBP22105 4242 aa4.8□□□□□ -1.64
COL18A1-203ENST00000359759 KRTAP9-7A8MTY7 169 aa4.8□□□□□ -1.64
COL18A1-203ENST00000359759 KRTAP4-9Q9BYQ8 210 aa4.77□□□□□ -1.65
COL18A1-203ENST00000359759 KRTAP19-2Q3LHN2 52 aa4.75□□□□□ -1.65
COL18A1-203ENST00000359759 KRTAP19-6Q3LI70 58 aa4.74□□□□□ -1.65
COL18A1-203ENST00000359759 FLGP20930 4061 aaPredicted RBP4.72□□□□□ -1.65
COL18A1-203ENST00000359759 LCE5AQ5TCM9 118 aa4.63□□□□□ -1.67
COL18A1-203ENST00000359759 MUC17Q685J3 4493 aa4.63□□□□□ -1.67
COL18A1-203ENST00000359759 LCE2AQ5TA79 106 aaPredicted RBP4.59□□□□□ -1.67
COL18A1-203ENST00000359759 FSIP2Q5CZC0 6907 aa4.55□□□□□ -1.68
COL18A1-203ENST00000359759 RNF213Q63HN8 5207 aa4.52□□□□□ -1.69
COL18A1-203ENST00000359759 KRTAP2-3P0C7H8 128 aa4.52□□□□□ -1.69
COL18A1-203ENST00000359759 KRTAP2-4Q9BYR9 128 aa4.52□□□□□ -1.69
COL18A1-203ENST00000359759 KRTAP2-1Q9BYU5 128 aa4.52□□□□□ -1.69
COL18A1-203ENST00000359759 UBR4Q5T4S7 5183 aa4.51□□□□□ -1.69
COL18A1-203ENST00000359759 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.51□□□□□ -1.69
COL18A1-203ENST00000359759 MT1AP04731 61 aa4.49□□□□□ -1.69
COL18A1-203ENST00000359759 KRTAP6-3Q3LI67 103 aa4.44□□□□□ -1.7
COL18A1-203ENST00000359759 KRTAP6-2Q3LI66 62 aa4.43□□□□□ -1.7
COL18A1-203ENST00000359759 KRTAP19-7Q3SYF9 63 aa4.42□□□□□ -1.7
COL18A1-203ENST00000359759 SYNE2Q8WXH0 6885 aaKnown RBP4.41□□□□□ -1.7
COL18A1-203ENST00000359759 HMCN2Q8NDA2 5059 aa4.39□□□□□ -1.71
COL18A1-203ENST00000359759 FAT4Q6V0I7 4981 aa4.38□□□□□ -1.71
COL18A1-203ENST00000359759 LCE1CQ5T751 118 aa4.37□□□□□ -1.71
COL18A1-203ENST00000359759 LCE1EQ5T753 118 aa4.37□□□□□ -1.71
COL18A1-203ENST00000359759 LCE1FQ5T754 118 aa4.37□□□□□ -1.71
COL18A1-203ENST00000359759 LCE1AQ5T7P2 110 aa4.37□□□□□ -1.71
COL18A1-203ENST00000359759 KRTAP6-1Q3LI64 71 aa4.32□□□□□ -1.72
COL18A1-203ENST00000359759 KRTAP2-2Q9BYT5 123 aa4.29□□□□□ -1.72
COL18A1-203ENST00000359759 KRTAP9-4Q9BYQ2 154 aa4.21□□□□□ -1.74
COL18A1-203ENST00000359759 KRTAP9-6A8MVA2 160 aa4.18□□□□□ -1.74
COL18A1-203ENST00000359759 MUC2Q02817 5179 aa4.16□□□□□ -1.74
COL18A1-203ENST00000359759 LCE4AQ5TA78 99 aa4.15□□□□□ -1.75
COL18A1-203ENST00000359759 SYNE1Q8NF91 8797 aaKnown RBP4.15□□□□□ -1.75
COL18A1-203ENST00000359759 KRTAP9-9Q9BYP9 154 aa3.9□□□□□ -1.79
COL18A1-203ENST00000359759 OBSCNQ5VST9 7968 aa3.84□□□□□ -1.79
COL18A1-203ENST00000359759 KRTAP4-11Q9BYQ6 195 aa3.83□□□□□ -1.8
COL18A1-203ENST00000359759 USH2AO75445 5202 aa3.81□□□□□ -1.8
COL18A1-203ENST00000359759 NEBP20929 6669 aa3.63□□□□□ -1.83
COL18A1-203ENST00000359759 KRTAP5-9P26371 169 aa3.62□□□□□ -1.83
COL18A1-203ENST00000359759 MACF1Q9UPN3 7388 aaKnown RBP3.62□□□□□ -1.83
COL18A1-203ENST00000359759 KRTAP4-6Q9BYQ5 205 aa3.6□□□□□ -1.83
COL18A1-203ENST00000359759 KRTAP20-2Q3LI61 65 aa3.58□□□□□ -1.84
COL18A1-203ENST00000359759 SSPOA2VEC9 5147 aa3.56□□□□□ -1.84
COL18A1-203ENST00000359759 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
COL18A1-203ENST00000359759 DSTQ03001 7570 aaKnown RBP3.49□□□□□ -1.85
COL18A1-203ENST00000359759 MDN1Q9NU22 5596 aa3.44□□□□□ -1.86
COL18A1-203ENST00000359759 FCGBPQ9Y6R7 5405 aaPredicted RBP3.43□□□□□ -1.86
COL18A1-203ENST00000359759 KRTAP4-12Q9BQ66 201 aa3.42□□□□□ -1.86
COL18A1-203ENST00000359759 KRTAP4-2Q9BYR5 136 aa3.42□□□□□ -1.86
COL18A1-203ENST00000359759 KMT2DO14686 5537 aa3.41□□□□□ -1.86
COL18A1-203ENST00000359759 GPR98Q8WXG9 6306 aa3.39□□□□□ -1.87
COL18A1-203ENST00000359759 KRTAP5-4Q6L8H1 288 aa3.18□□□□□ -1.9
COL18A1-203ENST00000359759 MUC12Q9UKN1 5478 aa3.17□□□□□ -1.9
COL18A1-203ENST00000359759 KRTAP5-5Q701N2 237 aaPredicted RBP3.16□□□□□ -1.9
COL18A1-203ENST00000359759 MUC19Q7Z5P9 8384 aa3.13□□□□□ -1.91
COL18A1-203ENST00000359759 AHNAK2Q8IVF2 5795 aa3□□□□□ -1.93
COL18A1-203ENST00000359759 KRTAP5-3Q6L8H2 238 aa2.95□□□□□ -1.94
COL18A1-203ENST00000359759 HMCN1Q96RW7 5635 aa2.8□□□□□ -1.96
COL18A1-203ENST00000359759 KRTAP5-8O75690 187 aa2.71□□□□□ -1.98
COL18A1-203ENST00000359759 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
COL18A1-203ENST00000359759 MUC5ACP98088 5654 aa2.59□□□□□ -2
COL18A1-203ENST00000359759 KRTAP5-2Q701N4 177 aa2.52□□□□□ -2.01
COL18A1-203ENST00000359759 AHNAKQ09666 5890 aaKnown RBP2.5□□□□□ -2.01
COL18A1-203ENST00000359759 KRTAP5-10Q6L8G5 202 aa2.42□□□□□ -2.02
COL18A1-203ENST00000359759 MUC5BQ9HC84 5762 aaPredicted RBP2.26□□□□□ -2.05
COL18A1-203ENST00000359759 KRTAP5-11Q6L8G4 156 aa2.23□□□□□ -2.05
COL18A1-203ENST00000359759 KRTAP5-1Q6L8H4 278 aa2.19□□□□□ -2.06
COL18A1-203ENST00000359759 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.07□□□□□ -2.08
COL18A1-203ENST00000359759 KRTAP5-7Q6L8G8 165 aa2.03□□□□□ -2.08
COL18A1-203ENST00000359759 KRTAP21-2Q3LI59 83 aa1.97□□□□□ -2.09
COL18A1-203ENST00000359759 KRTAP21-1Q3LI58 79 aa1.95□□□□□ -2.1
COL18A1-203ENST00000359759 MUC16Q8WXI7 14507 aa1.5□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 6.2 ms