RNA–Protein interactions for RNA: ENST00000355238.10

SYNCRIP-201, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-201ENST00000355238 KRTAP2-3P0C7H8 128 aa3.83□□□□□ -1.8
SYNCRIP-201ENST00000355238 KRTAP2-4Q9BYR9 128 aa3.83□□□□□ -1.8
SYNCRIP-201ENST00000355238 KRTAP2-1Q9BYU5 128 aa3.83□□□□□ -1.8
SYNCRIP-201ENST00000355238 TNXBP22105 4242 aa3.81□□□□□ -1.8
SYNCRIP-201ENST00000355238 LOC100996750A0A140TA64 210 aa3.77□□□□□ -1.81
SYNCRIP-201ENST00000355238 MUC17Q685J3 4493 aa3.74□□□□□ -1.81
SYNCRIP-201ENST00000355238 LPAP08519 4548 aa3.73□□□□□ -1.81
SYNCRIP-201ENST00000355238 MT4P47944 62 aa3.73□□□□□ -1.81
SYNCRIP-201ENST00000355238 FLGP20930 4061 aaPredicted RBP3.73□□□□□ -1.81
SYNCRIP-201ENST00000355238 KRTAP4-3Q9BYR4 195 aa3.68□□□□□ -1.82
SYNCRIP-201ENST00000355238 KRTAP19-7Q3SYF9 63 aa3.67□□□□□ -1.82
SYNCRIP-201ENST00000355238 MT1AP04731 61 aa3.66□□□□□ -1.82
SYNCRIP-201ENST00000355238 RNF213Q63HN8 5207 aa3.66□□□□□ -1.82
SYNCRIP-201ENST00000355238 UBR4Q5T4S7 5183 aa3.66□□□□□ -1.82
SYNCRIP-201ENST00000355238 HMCN2Q8NDA2 5059 aa3.66□□□□□ -1.82
SYNCRIP-201ENST00000355238 MUC2Q02817 5179 aa3.65□□□□□ -1.82
SYNCRIP-201ENST00000355238 KRTAP19-6Q3LI70 58 aa3.63□□□□□ -1.83
SYNCRIP-201ENST00000355238 KRTAP4-9Q9BYQ8 210 aa3.58□□□□□ -1.84
SYNCRIP-201ENST00000355238 SYNE1Q8NF91 8797 aaKnown RBP3.57□□□□□ -1.84
SYNCRIP-201ENST00000355238 LCE1BQ5T7P3 118 aa3.57□□□□□ -1.84
SYNCRIP-201ENST00000355238 LCE1DQ5T752 114 aa3.55□□□□□ -1.84
SYNCRIP-201ENST00000355238 FAT4Q6V0I7 4981 aa3.52□□□□□ -1.85
SYNCRIP-201ENST00000355238 KRTAP9-6A8MVA2 160 aa3.5□□□□□ -1.85
SYNCRIP-201ENST00000355238 KRTAP6-2Q3LI66 62 aa3.48□□□□□ -1.85
SYNCRIP-201ENST00000355238 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.45□□□□□ -1.86
SYNCRIP-201ENST00000355238 KRTAP2-2Q9BYT5 123 aa3.43□□□□□ -1.86
SYNCRIP-201ENST00000355238 KRTAP6-3Q3LI67 103 aa3.4□□□□□ -1.87
SYNCRIP-201ENST00000355238 KRTAP6-1Q3LI64 71 aa3.38□□□□□ -1.87
SYNCRIP-201ENST00000355238 KRTAP9-4Q9BYQ2 154 aa3.34□□□□□ -1.87
SYNCRIP-201ENST00000355238 LCE5AQ5TCM9 118 aa3.34□□□□□ -1.87
SYNCRIP-201ENST00000355238 LCE1CQ5T751 118 aa3.28□□□□□ -1.88
SYNCRIP-201ENST00000355238 LCE1EQ5T753 118 aa3.28□□□□□ -1.88
SYNCRIP-201ENST00000355238 LCE1FQ5T754 118 aa3.28□□□□□ -1.88
SYNCRIP-201ENST00000355238 LCE1AQ5T7P2 110 aa3.28□□□□□ -1.88
SYNCRIP-201ENST00000355238 LCE2AQ5TA79 106 aaPredicted RBP3.27□□□□□ -1.89
SYNCRIP-201ENST00000355238 KRTAP9-9Q9BYP9 154 aa3.25□□□□□ -1.89
SYNCRIP-201ENST00000355238 OBSCNQ5VST9 7968 aa3.25□□□□□ -1.89
SYNCRIP-201ENST00000355238 FSIP2Q5CZC0 6907 aa3.22□□□□□ -1.89
SYNCRIP-201ENST00000355238 LCE4AQ5TA78 99 aa3.14□□□□□ -1.91
SYNCRIP-201ENST00000355238 SYNE2Q8WXH0 6885 aaKnown RBP3.13□□□□□ -1.91
SYNCRIP-201ENST00000355238 USH2AO75445 5202 aa3.11□□□□□ -1.91
SYNCRIP-201ENST00000355238 SSPOA2VEC9 5147 aa2.94□□□□□ -1.94
SYNCRIP-201ENST00000355238 KRTAP4-11Q9BYQ6 195 aa2.89□□□□□ -1.95
SYNCRIP-201ENST00000355238 FCGBPQ9Y6R7 5405 aaPredicted RBP2.85□□□□□ -1.95
SYNCRIP-201ENST00000355238 KMT2DO14686 5537 aa2.84□□□□□ -1.96
SYNCRIP-201ENST00000355238 KRTAP4-2Q9BYR5 136 aa2.83□□□□□ -1.96
SYNCRIP-201ENST00000355238 NEBP20929 6669 aa2.79□□□□□ -1.96
SYNCRIP-201ENST00000355238 MACF1Q9UPN3 7388 aaKnown RBP2.73□□□□□ -1.97
SYNCRIP-201ENST00000355238 KRTAP5-5Q701N2 237 aaPredicted RBP2.7□□□□□ -1.98
SYNCRIP-201ENST00000355238 DSTQ03001 7570 aaKnown RBP2.7□□□□□ -1.98
SYNCRIP-201ENST00000355238 MUC12Q9UKN1 5478 aa2.69□□□□□ -1.98
SYNCRIP-201ENST00000355238 GPR98Q8WXG9 6306 aa2.63□□□□□ -1.99
SYNCRIP-201ENST00000355238 KRTAP5-9P26371 169 aa2.6□□□□□ -1.99
SYNCRIP-201ENST00000355238 MUC19Q7Z5P9 8384 aa2.58□□□□□ -2
SYNCRIP-201ENST00000355238 KRTAP20-2Q3LI61 65 aa2.58□□□□□ -2
SYNCRIP-201ENST00000355238 MDN1Q9NU22 5596 aa2.56□□□□□ -2
SYNCRIP-201ENST00000355238 KRTAP4-6Q9BYQ5 205 aa2.55□□□□□ -2
SYNCRIP-201ENST00000355238 KRTAP4-4Q9BYR3 166 aa2.46□□□□□ -2.01
SYNCRIP-201ENST00000355238 KRTAP5-4Q6L8H1 288 aa2.37□□□□□ -2.03
SYNCRIP-201ENST00000355238 PHGR1C9JFL3 82 aa2.33□□□□□ -2.04
SYNCRIP-201ENST00000355238 KRTAP4-12Q9BQ66 201 aa2.32□□□□□ -2.04
SYNCRIP-201ENST00000355238 KRTAP5-3Q6L8H2 238 aa2.27□□□□□ -2.05
SYNCRIP-201ENST00000355238 KRTAP5-10Q6L8G5 202 aa2.11□□□□□ -2.07
SYNCRIP-201ENST00000355238 HMCN1Q96RW7 5635 aa2.04□□□□□ -2.08
SYNCRIP-201ENST00000355238 MUC5ACP98088 5654 aa2.02□□□□□ -2.09
SYNCRIP-201ENST00000355238 KRTAP5-2Q701N4 177 aa1.93□□□□□ -2.1
SYNCRIP-201ENST00000355238 AHNAK2Q8IVF2 5795 aa1.87□□□□□ -2.11
SYNCRIP-201ENST00000355238 KRTAP5-8O75690 187 aa1.85□□□□□ -2.11
SYNCRIP-201ENST00000355238 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
SYNCRIP-201ENST00000355238 KRTAP5-1Q6L8H4 278 aa1.78□□□□□ -2.12
SYNCRIP-201ENST00000355238 KRTAP5-7Q6L8G8 165 aa1.77□□□□□ -2.13
SYNCRIP-201ENST00000355238 KRTAP5-11Q6L8G4 156 aa1.76□□□□□ -2.13
SYNCRIP-201ENST00000355238 MUC5BQ9HC84 5762 aaPredicted RBP1.75□□□□□ -2.13
SYNCRIP-201ENST00000355238 KRTAP21-2Q3LI59 83 aa1.7□□□□□ -2.14
SYNCRIP-201ENST00000355238 AHNAKQ09666 5890 aaKnown RBP1.64□□□□□ -2.15
SYNCRIP-201ENST00000355238 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.58□□□□□ -2.16
SYNCRIP-201ENST00000355238 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 13.5 ms