RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 LCE2DQ5TA82 110 aaPredicted RBP4.9□□□□□ -1.62
COL17A1-201ENST00000353479 SPRR5A0A1B0GTR4 108 aa4.9□□□□□ -1.62
COL17A1-201ENST00000353479 HMCN2Q8NDA2 5059 aa4.9□□□□□ -1.63
COL17A1-201ENST00000353479 MT1MQ8N339 61 aa4.8□□□□□ -1.64
COL17A1-201ENST00000353479 KRTAP9-6A0A140TA67 174 aa4.76□□□□□ -1.65
COL17A1-201ENST00000353479 LCE3DQ9BYE3 92 aa4.73□□□□□ -1.65
COL17A1-201ENST00000353479 KRTAP4-3Q9BYR4 195 aa4.71□□□□□ -1.65
COL17A1-201ENST00000353479 MUC2Q02817 5179 aa4.69□□□□□ -1.66
COL17A1-201ENST00000353479 LOC100996750A0A140TA64 210 aa4.69□□□□□ -1.66
COL17A1-201ENST00000353479 MT4P47944 62 aa4.66□□□□□ -1.66
COL17A1-201ENST00000353479 KRTAP19-7Q3SYF9 63 aa4.66□□□□□ -1.66
COL17A1-201ENST00000353479 LCE3EQ5T5B0 92 aa4.63□□□□□ -1.67
COL17A1-201ENST00000353479 MT3P25713 68 aa4.53□□□□□ -1.68
COL17A1-201ENST00000353479 KRTAP9-7A8MTY7 169 aa4.47□□□□□ -1.69
COL17A1-201ENST00000353479 SYNE1Q8NF91 8797 aaKnown RBP4.43□□□□□ -1.7
COL17A1-201ENST00000353479 SYNE2Q8WXH0 6885 aaKnown RBP4.42□□□□□ -1.7
COL17A1-201ENST00000353479 KRTAP6-3Q3LI67 103 aa4.42□□□□□ -1.7
COL17A1-201ENST00000353479 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.39□□□□□ -1.71
COL17A1-201ENST00000353479 MT1AP04731 61 aa4.39□□□□□ -1.71
COL17A1-201ENST00000353479 KRTAP20-1Q3LI63 56 aa4.38□□□□□ -1.71
COL17A1-201ENST00000353479 LCE1AQ5T7P2 110 aa4.35□□□□□ -1.71
COL17A1-201ENST00000353479 LCE1DQ5T752 114 aa4.3□□□□□ -1.72
COL17A1-201ENST00000353479 LCE1BQ5T7P3 118 aa4.29□□□□□ -1.72
COL17A1-201ENST00000353479 LCE5AQ5TCM9 118 aa4.28□□□□□ -1.72
COL17A1-201ENST00000353479 KRTAP2-3P0C7H8 128 aa4.27□□□□□ -1.73
COL17A1-201ENST00000353479 KRTAP2-4Q9BYR9 128 aa4.27□□□□□ -1.73
COL17A1-201ENST00000353479 KRTAP2-1Q9BYU5 128 aa4.27□□□□□ -1.73
COL17A1-201ENST00000353479 KRTAP4-9Q9BYQ8 210 aa4.26□□□□□ -1.73
COL17A1-201ENST00000353479 USH2AO75445 5202 aa4.26□□□□□ -1.73
COL17A1-201ENST00000353479 PRM1P04553 51 aa4.2□□□□□ -1.74
COL17A1-201ENST00000353479 KRTAP9-6A8MVA2 160 aa4.2□□□□□ -1.74
COL17A1-201ENST00000353479 KRTAP6-1Q3LI64 71 aa4.19□□□□□ -1.74
COL17A1-201ENST00000353479 KRTAP6-2Q3LI66 62 aa4.11□□□□□ -1.75
COL17A1-201ENST00000353479 KRTAP2-2Q9BYT5 123 aa4.11□□□□□ -1.75
COL17A1-201ENST00000353479 LCE4AQ5TA78 99 aa4.09□□□□□ -1.75
COL17A1-201ENST00000353479 OBSCNQ5VST9 7968 aa4.08□□□□□ -1.76
COL17A1-201ENST00000353479 KRTAP9-4Q9BYQ2 154 aa4.08□□□□□ -1.76
COL17A1-201ENST00000353479 KMT2DO14686 5537 aa4.05□□□□□ -1.76
COL17A1-201ENST00000353479 MACF1Q9UPN3 7388 aaKnown RBP4.02□□□□□ -1.77
COL17A1-201ENST00000353479 FCGBPQ9Y6R7 5405 aaPredicted RBP4.01□□□□□ -1.77
COL17A1-201ENST00000353479 DSTQ03001 7570 aaKnown RBP3.93□□□□□ -1.78
COL17A1-201ENST00000353479 SSPOA2VEC9 5147 aa3.88□□□□□ -1.79
COL17A1-201ENST00000353479 KRTAP5-9P26371 169 aa3.88□□□□□ -1.79
COL17A1-201ENST00000353479 NEBP20929 6669 aa3.79□□□□□ -1.8
COL17A1-201ENST00000353479 MUC12Q9UKN1 5478 aa3.78□□□□□ -1.8
COL17A1-201ENST00000353479 KRTAP4-6Q9BYQ5 205 aa3.64□□□□□ -1.83
COL17A1-201ENST00000353479 LCE1CQ5T751 118 aa3.58□□□□□ -1.84
COL17A1-201ENST00000353479 LCE1EQ5T753 118 aa3.58□□□□□ -1.84
COL17A1-201ENST00000353479 LCE1FQ5T754 118 aa3.58□□□□□ -1.84
COL17A1-201ENST00000353479 KRTAP20-2Q3LI61 65 aa3.55□□□□□ -1.84
COL17A1-201ENST00000353479 MDN1Q9NU22 5596 aa3.53□□□□□ -1.84
COL17A1-201ENST00000353479 KRTAP9-9Q9BYP9 154 aa3.49□□□□□ -1.85
COL17A1-201ENST00000353479 KRTAP5-4Q6L8H1 288 aa3.31□□□□□ -1.88
COL17A1-201ENST00000353479 KRTAP5-5Q701N2 237 aaPredicted RBP3.24□□□□□ -1.89
COL17A1-201ENST00000353479 KRTAP4-11Q9BYQ6 195 aa3.18□□□□□ -1.9
COL17A1-201ENST00000353479 GPR98Q8WXG9 6306 aa3.16□□□□□ -1.9
COL17A1-201ENST00000353479 MUC19Q7Z5P9 8384 aa3.1□□□□□ -1.91
COL17A1-201ENST00000353479 KRTAP4-12Q9BQ66 201 aa3.09□□□□□ -1.91
COL17A1-201ENST00000353479 KRTAP4-2Q9BYR5 136 aa3.09□□□□□ -1.91
COL17A1-201ENST00000353479 KRTAP4-4Q9BYR3 166 aa3.06□□□□□ -1.92
COL17A1-201ENST00000353479 KRTAP5-3Q6L8H2 238 aa2.95□□□□□ -1.94
COL17A1-201ENST00000353479 MUC5ACP98088 5654 aa2.93□□□□□ -1.94
COL17A1-201ENST00000353479 HMCN1Q96RW7 5635 aa2.8□□□□□ -1.96
COL17A1-201ENST00000353479 KRTAP5-8O75690 187 aa2.72□□□□□ -1.97
COL17A1-201ENST00000353479 KRTAP5-2Q701N4 177 aa2.69□□□□□ -1.98
COL17A1-201ENST00000353479 AHNAK2Q8IVF2 5795 aa2.69□□□□□ -1.98
COL17A1-201ENST00000353479 KRTAP5-10Q6L8G5 202 aa2.49□□□□□ -2.01
COL17A1-201ENST00000353479 MUC5BQ9HC84 5762 aaPredicted RBP2.39□□□□□ -2.03
COL17A1-201ENST00000353479 KRTAP5-1Q6L8H4 278 aa2.39□□□□□ -2.03
COL17A1-201ENST00000353479 AHNAKQ09666 5890 aaKnown RBP2.33□□□□□ -2.04
COL17A1-201ENST00000353479 KRTAP5-11Q6L8G4 156 aa2.31□□□□□ -2.04
COL17A1-201ENST00000353479 PHGR1C9JFL3 82 aa2.3□□□□□ -2.04
COL17A1-201ENST00000353479 KRTAP21-2Q3LI59 83 aa2.22□□□□□ -2.05
COL17A1-201ENST00000353479 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.08□□□□□ -2.08
COL17A1-201ENST00000353479 KRTAP5-7Q6L8G8 165 aa2.06□□□□□ -2.08
COL17A1-201ENST00000353479 KRTAP21-1Q3LI58 79 aa1.8□□□□□ -2.12
COL17A1-201ENST00000353479 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 13.1 ms