RNA–Protein interactions for RNA: ENST00000350148.9

SMAD9-201, Transcript of SMAD family member 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMAD9, Length 5,447 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-201ENST00000350148 KRTAP4-7Q9BYR0 210 aa4.04□□□□□ -1.76
SMAD9-201ENST00000350148 UBR4Q5T4S7 5183 aa4.03□□□□□ -1.76
SMAD9-201ENST00000350148 KRTAP19-7Q3SYF9 63 aa4□□□□□ -1.77
SMAD9-201ENST00000350148 MT1MQ8N339 61 aa3.99□□□□□ -1.77
SMAD9-201ENST00000350148 LCE3BQ5TA77 95 aa3.9□□□□□ -1.79
SMAD9-201ENST00000350148 KRTAP9-6A0A140TA67 174 aa3.88□□□□□ -1.79
SMAD9-201ENST00000350148 KMT2DO14686 5537 aa3.86□□□□□ -1.79
SMAD9-201ENST00000350148 LCE1AQ5T7P2 110 aa3.84□□□□□ -1.79
SMAD9-201ENST00000350148 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.79
SMAD9-201ENST00000350148 LCE3EQ5T5B0 92 aa3.84□□□□□ -1.8
SMAD9-201ENST00000350148 MT3P25713 68 aa3.83□□□□□ -1.8
SMAD9-201ENST00000350148 KRTAP6-3Q3LI67 103 aa3.82□□□□□ -1.8
SMAD9-201ENST00000350148 LOC100996750A0A140TA64 210 aa3.79□□□□□ -1.8
SMAD9-201ENST00000350148 KRTAP9-6A8MVA2 160 aa3.78□□□□□ -1.8
SMAD9-201ENST00000350148 PRM1P04553 51 aa3.75□□□□□ -1.81
SMAD9-201ENST00000350148 LCE5AQ5TCM9 118 aa3.72□□□□□ -1.81
SMAD9-201ENST00000350148 MT1AP04731 61 aa3.7□□□□□ -1.82
SMAD9-201ENST00000350148 KRTAP4-3Q9BYR4 195 aa3.7□□□□□ -1.82
SMAD9-201ENST00000350148 USH2AO75445 5202 aa3.69□□□□□ -1.82
SMAD9-201ENST00000350148 KRTAP2-3P0C7H8 128 aa3.67□□□□□ -1.82
SMAD9-201ENST00000350148 KRTAP2-4Q9BYR9 128 aa3.67□□□□□ -1.82
SMAD9-201ENST00000350148 KRTAP2-1Q9BYU5 128 aa3.67□□□□□ -1.82
SMAD9-201ENST00000350148 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.66□□□□□ -1.82
SMAD9-201ENST00000350148 KRTAP9-7A8MTY7 169 aa3.61□□□□□ -1.83
SMAD9-201ENST00000350148 KRTAP4-9Q9BYQ8 210 aa3.59□□□□□ -1.83
SMAD9-201ENST00000350148 FSIP2Q5CZC0 6907 aa3.57□□□□□ -1.84
SMAD9-201ENST00000350148 KRTAP5-9P26371 169 aa3.56□□□□□ -1.84
SMAD9-201ENST00000350148 LCE4AQ5TA78 99 aa3.5□□□□□ -1.85
SMAD9-201ENST00000350148 KRTAP20-1Q3LI63 56 aa3.49□□□□□ -1.85
SMAD9-201ENST00000350148 MT4P47944 62 aa3.46□□□□□ -1.86
SMAD9-201ENST00000350148 SYNE2Q8WXH0 6885 aaKnown RBP3.43□□□□□ -1.86
SMAD9-201ENST00000350148 KRTAP9-4Q9BYQ2 154 aa3.43□□□□□ -1.86
SMAD9-201ENST00000350148 KRTAP2-2Q9BYT5 123 aa3.42□□□□□ -1.86
SMAD9-201ENST00000350148 KRTAP6-1Q3LI64 71 aa3.41□□□□□ -1.86
SMAD9-201ENST00000350148 SSPOA2VEC9 5147 aa3.4□□□□□ -1.86
SMAD9-201ENST00000350148 FCGBPQ9Y6R7 5405 aaPredicted RBP3.37□□□□□ -1.87
SMAD9-201ENST00000350148 DSTQ03001 7570 aaKnown RBP3.3□□□□□ -1.88
SMAD9-201ENST00000350148 KRTAP6-2Q3LI66 62 aa3.27□□□□□ -1.89
SMAD9-201ENST00000350148 SYNE1Q8NF91 8797 aaKnown RBP3.25□□□□□ -1.89
SMAD9-201ENST00000350148 MACF1Q9UPN3 7388 aaKnown RBP3.23□□□□□ -1.89
SMAD9-201ENST00000350148 MUC12Q9UKN1 5478 aa3.18□□□□□ -1.9
SMAD9-201ENST00000350148 NEBP20929 6669 aa3.17□□□□□ -1.9
SMAD9-201ENST00000350148 LCE1DQ5T752 114 aa3.17□□□□□ -1.9
SMAD9-201ENST00000350148 OBSCNQ5VST9 7968 aa3.1□□□□□ -1.91
SMAD9-201ENST00000350148 LCE1BQ5T7P3 118 aa3.1□□□□□ -1.91
SMAD9-201ENST00000350148 KRTAP5-5Q701N2 237 aaPredicted RBP3.03□□□□□ -1.92
SMAD9-201ENST00000350148 KRTAP20-2Q3LI61 65 aa3□□□□□ -1.93
SMAD9-201ENST00000350148 KRTAP5-4Q6L8H1 288 aa2.96□□□□□ -1.94
SMAD9-201ENST00000350148 MDN1Q9NU22 5596 aa2.95□□□□□ -1.94
SMAD9-201ENST00000350148 KRTAP4-6Q9BYQ5 205 aa2.92□□□□□ -1.94
SMAD9-201ENST00000350148 LCE1EQ5T753 118 aa2.89□□□□□ -1.95
SMAD9-201ENST00000350148 GPR98Q8WXG9 6306 aa2.86□□□□□ -1.95
SMAD9-201ENST00000350148 KRTAP9-9Q9BYP9 154 aa2.72□□□□□ -1.97
SMAD9-201ENST00000350148 KRTAP4-11Q9BYQ6 195 aa2.71□□□□□ -1.98
SMAD9-201ENST00000350148 KRTAP5-2Q701N4 177 aa2.61□□□□□ -1.99
SMAD9-201ENST00000350148 LCE1FQ5T754 118 aa2.59□□□□□ -1.99
SMAD9-201ENST00000350148 LCE1CQ5T751 118 aa2.57□□□□□ -2
SMAD9-201ENST00000350148 KRTAP5-3Q6L8H2 238 aa2.56□□□□□ -2
SMAD9-201ENST00000350148 MUC19Q7Z5P9 8384 aa2.5□□□□□ -2.01
SMAD9-201ENST00000350148 HMCN1Q96RW7 5635 aa2.34□□□□□ -2.04
SMAD9-201ENST00000350148 KRTAP4-4Q9BYR3 166 aa2.31□□□□□ -2.04
SMAD9-201ENST00000350148 KRTAP5-8O75690 187 aa2.28□□□□□ -2.04
SMAD9-201ENST00000350148 MUC5ACP98088 5654 aa2.25□□□□□ -2.05
SMAD9-201ENST00000350148 AHNAK2Q8IVF2 5795 aa2.24□□□□□ -2.05
SMAD9-201ENST00000350148 KRTAP4-2Q9BYR5 136 aa2.22□□□□□ -2.05
SMAD9-201ENST00000350148 KRTAP5-1Q6L8H4 278 aa2.2□□□□□ -2.06
SMAD9-201ENST00000350148 KRTAP4-12Q9BQ66 201 aa2.2□□□□□ -2.06
SMAD9-201ENST00000350148 KRTAP5-10Q6L8G5 202 aa2.18□□□□□ -2.06
SMAD9-201ENST00000350148 KRTAP5-11Q6L8G4 156 aa2.13□□□□□ -2.07
SMAD9-201ENST00000350148 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.12□□□□□ -2.07
SMAD9-201ENST00000350148 AHNAKQ09666 5890 aaKnown RBP2.11□□□□□ -2.07
SMAD9-201ENST00000350148 KRTAP5-7Q6L8G8 165 aa2.08□□□□□ -2.08
SMAD9-201ENST00000350148 MUC5BQ9HC84 5762 aaPredicted RBP2.02□□□□□ -2.09
SMAD9-201ENST00000350148 KRTAP21-2Q3LI59 83 aa2□□□□□ -2.09
SMAD9-201ENST00000350148 KRTAP21-1Q3LI58 79 aa1.8□□□□□ -2.12
SMAD9-201ENST00000350148 PHGR1C9JFL3 82 aa1.77□□□□□ -2.13
SMAD9-201ENST00000350148 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 10.5 ms