RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 RYR3Q15413 4870 aa3.61□□□□□ -1.83
COL6A3-202ENST00000347401 KRTAP6-2Q3LI66 62 aa3.57□□□□□ -1.84
COL6A3-202ENST00000347401 LPAP08519 4548 aa3.55□□□□□ -1.84
COL6A3-202ENST00000347401 KRTAP17-1Q9BYP8 105 aa3.53□□□□□ -1.84
COL6A3-202ENST00000347401 KMT2CQ8NEZ4 4911 aaKnown RBP3.52□□□□□ -1.85
COL6A3-202ENST00000347401 KRTAP20-1Q3LI63 56 aa3.49□□□□□ -1.85
COL6A3-202ENST00000347401 LCE4AQ5TA78 99 aa3.48□□□□□ -1.85
COL6A3-202ENST00000347401 KRTAP9-4Q9BYQ2 154 aa3.48□□□□□ -1.85
COL6A3-202ENST00000347401 SYNE2Q8WXH0 6885 aaKnown RBP3.45□□□□□ -1.86
COL6A3-202ENST00000347401 KRTAP4-3Q9BYR4 195 aa3.45□□□□□ -1.86
COL6A3-202ENST00000347401 LCE1CQ5T751 118 aa3.45□□□□□ -1.86
COL6A3-202ENST00000347401 LCE1EQ5T753 118 aa3.45□□□□□ -1.86
COL6A3-202ENST00000347401 LCE1FQ5T754 118 aa3.45□□□□□ -1.86
COL6A3-202ENST00000347401 KRTAP9-6A0A140TA67 174 aa3.44□□□□□ -1.86
COL6A3-202ENST00000347401 KRTAP4-9Q9BYQ8 210 aa3.41□□□□□ -1.86
COL6A3-202ENST00000347401 BIRC6Q9NR09 4857 aa3.38□□□□□ -1.87
COL6A3-202ENST00000347401 RYR2Q92736 4967 aa3.37□□□□□ -1.87
COL6A3-202ENST00000347401 PCLOQ9Y6V0 5065 aa3.37□□□□□ -1.87
COL6A3-202ENST00000347401 KRTAP6-1Q3LI64 71 aa3.36□□□□□ -1.87
COL6A3-202ENST00000347401 KRTAP2-2Q9BYT5 123 aa3.36□□□□□ -1.87
COL6A3-202ENST00000347401 KRTAP9-6A8MVA2 160 aa3.35□□□□□ -1.87
COL6A3-202ENST00000347401 KRTAP9-7A8MTY7 169 aa3.31□□□□□ -1.88
COL6A3-202ENST00000347401 HERC2O95714 4834 aa3.3□□□□□ -1.88
COL6A3-202ENST00000347401 LCE2AQ5TA79 106 aaPredicted RBP3.29□□□□□ -1.88
COL6A3-202ENST00000347401 SYNE1Q8NF91 8797 aaKnown RBP3.27□□□□□ -1.89
COL6A3-202ENST00000347401 KRTAP6-3Q3LI67 103 aa3.26□□□□□ -1.89
COL6A3-202ENST00000347401 HERC1Q15751 4861 aa3.2□□□□□ -1.9
COL6A3-202ENST00000347401 HMCN2Q8NDA2 5059 aa3.1□□□□□ -1.91
COL6A3-202ENST00000347401 KRTAP9-9Q9BYP9 154 aa3.1□□□□□ -1.91
COL6A3-202ENST00000347401 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.08□□□□□ -1.92
COL6A3-202ENST00000347401 HYDINQ4G0P3 5121 aa3□□□□□ -1.93
COL6A3-202ENST00000347401 KIAA1109Q2LD37 5005 aa3□□□□□ -1.93
COL6A3-202ENST00000347401 FSIP2Q5CZC0 6907 aa2.96□□□□□ -1.94
COL6A3-202ENST00000347401 KRTAP4-11Q9BYQ6 195 aa2.94□□□□□ -1.94
COL6A3-202ENST00000347401 EPPK1P58107 5090 aaKnown RBP2.87□□□□□ -1.95
COL6A3-202ENST00000347401 KRTAP5-9P26371 169 aa2.81□□□□□ -1.96
COL6A3-202ENST00000347401 RNF213Q63HN8 5207 aa2.78□□□□□ -1.96
COL6A3-202ENST00000347401 MUC2Q02817 5179 aa2.75□□□□□ -1.97
COL6A3-202ENST00000347401 KRTAP20-2Q3LI61 65 aa2.75□□□□□ -1.97
COL6A3-202ENST00000347401 OBSCNQ5VST9 7968 aa2.72□□□□□ -1.97
COL6A3-202ENST00000347401 UBR4Q5T4S7 5183 aa2.71□□□□□ -1.98
COL6A3-202ENST00000347401 DSTQ03001 7570 aaKnown RBP2.63□□□□□ -1.99
COL6A3-202ENST00000347401 KRTAP5-5Q701N2 237 aaPredicted RBP2.61□□□□□ -1.99
COL6A3-202ENST00000347401 FAT4Q6V0I7 4981 aa2.6□□□□□ -1.99
COL6A3-202ENST00000347401 KRTAP5-4Q6L8H1 288 aa2.59□□□□□ -1.99
COL6A3-202ENST00000347401 MACF1Q9UPN3 7388 aaKnown RBP2.59□□□□□ -2
COL6A3-202ENST00000347401 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
COL6A3-202ENST00000347401 KRTAP4-6Q9BYQ5 205 aa2.53□□□□□ -2
COL6A3-202ENST00000347401 ABCA13Q86UQ4 5058 aa2.51□□□□□ -2.01
COL6A3-202ENST00000347401 KRTAP4-12Q9BQ66 201 aa2.44□□□□□ -2.02
COL6A3-202ENST00000347401 KRTAP4-2Q9BYR5 136 aa2.44□□□□□ -2.02
COL6A3-202ENST00000347401 MDN1Q9NU22 5596 aa2.44□□□□□ -2.02
COL6A3-202ENST00000347401 NEBP20929 6669 aa2.43□□□□□ -2.02
COL6A3-202ENST00000347401 FCGBPQ9Y6R7 5405 aaPredicted RBP2.4□□□□□ -2.02
COL6A3-202ENST00000347401 KMT2DO14686 5537 aa2.4□□□□□ -2.03
COL6A3-202ENST00000347401 MUC19Q7Z5P9 8384 aa2.33□□□□□ -2.04
COL6A3-202ENST00000347401 KRTAP5-3Q6L8H2 238 aa2.24□□□□□ -2.05
COL6A3-202ENST00000347401 GPR98Q8WXG9 6306 aa2.21□□□□□ -2.06
COL6A3-202ENST00000347401 USH2AO75445 5202 aa2.2□□□□□ -2.06
COL6A3-202ENST00000347401 MUC5ACP98088 5654 aa2.19□□□□□ -2.06
COL6A3-202ENST00000347401 KRTAP5-10Q6L8G5 202 aa2.16□□□□□ -2.06
COL6A3-202ENST00000347401 SSPOA2VEC9 5147 aa2.04□□□□□ -2.08
COL6A3-202ENST00000347401 MUC12Q9UKN1 5478 aa2.03□□□□□ -2.09
COL6A3-202ENST00000347401 MUC5BQ9HC84 5762 aaPredicted RBP1.99□□□□□ -2.09
COL6A3-202ENST00000347401 KRTAP5-2Q701N4 177 aa1.98□□□□□ -2.09
COL6A3-202ENST00000347401 HMCN1Q96RW7 5635 aa1.96□□□□□ -2.1
COL6A3-202ENST00000347401 KRTAP5-11Q6L8G4 156 aa1.95□□□□□ -2.1
COL6A3-202ENST00000347401 PHGR1C9JFL3 82 aa1.94□□□□□ -2.1
COL6A3-202ENST00000347401 KRTAP5-8O75690 187 aa1.84□□□□□ -2.11
COL6A3-202ENST00000347401 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
COL6A3-202ENST00000347401 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.8□□□□□ -2.12
COL6A3-202ENST00000347401 AHNAK2Q8IVF2 5795 aa1.76□□□□□ -2.13
COL6A3-202ENST00000347401 KRTAP5-1Q6L8H4 278 aa1.76□□□□□ -2.13
COL6A3-202ENST00000347401 KRTAP21-2Q3LI59 83 aa1.72□□□□□ -2.13
COL6A3-202ENST00000347401 AHNAKQ09666 5890 aaKnown RBP1.61□□□□□ -2.15
COL6A3-202ENST00000347401 KRTAP5-7Q6L8G8 165 aa1.37□□□□□ -2.19
COL6A3-202ENST00000347401 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 41.5 ms