RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 MT1AP04731 61 aa6.76□□□□□ -1.33
NPAS3-201ENST00000346562 KRTAP9-6A0A140TA67 174 aa6.75□□□□□ -1.33
NPAS3-201ENST00000346562 LPAP08519 4548 aa6.75□□□□□ -1.33
NPAS3-201ENST00000346562 LRP2P98164 4655 aa6.74□□□□□ -1.33
NPAS3-201ENST00000346562 KMT2CQ8NEZ4 4911 aaKnown RBP6.72□□□□□ -1.33
NPAS3-201ENST00000346562 KRTAP20-1Q3LI63 56 aa6.7□□□□□ -1.34
NPAS3-201ENST00000346562 FLGP20930 4061 aaPredicted RBP6.68□□□□□ -1.34
NPAS3-201ENST00000346562 TNXBP22105 4242 aa6.65□□□□□ -1.34
NPAS3-201ENST00000346562 LCE5AQ5TCM9 118 aa6.65□□□□□ -1.34
NPAS3-201ENST00000346562 EPPK1P58107 5090 aaKnown RBP6.55□□□□□ -1.36
NPAS3-201ENST00000346562 KRTAP19-7Q3SYF9 63 aa6.54□□□□□ -1.36
NPAS3-201ENST00000346562 KRTAP2-3P0C7H8 128 aa6.53□□□□□ -1.36
NPAS3-201ENST00000346562 KRTAP2-4Q9BYR9 128 aa6.53□□□□□ -1.36
NPAS3-201ENST00000346562 KRTAP2-1Q9BYU5 128 aa6.53□□□□□ -1.36
NPAS3-201ENST00000346562 LCE2AQ5TA79 106 aaPredicted RBP6.48□□□□□ -1.37
NPAS3-201ENST00000346562 KRTAP4-9Q9BYQ8 210 aa6.41□□□□□ -1.38
NPAS3-201ENST00000346562 LCE1AQ5T7P2 110 aa6.39□□□□□ -1.39
NPAS3-201ENST00000346562 KRTAP6-3Q3LI67 103 aa6.38□□□□□ -1.39
NPAS3-201ENST00000346562 KRTAP9-7A8MTY7 169 aa6.37□□□□□ -1.39
NPAS3-201ENST00000346562 ABCA13Q86UQ4 5058 aa6.31□□□□□ -1.4
NPAS3-201ENST00000346562 LCE4AQ5TA78 99 aa6.3□□□□□ -1.4
NPAS3-201ENST00000346562 KRTAP9-4Q9BYQ2 154 aa6.25□□□□□ -1.41
NPAS3-201ENST00000346562 KRTAP6-2Q3LI66 62 aa6.23□□□□□ -1.41
NPAS3-201ENST00000346562 KRTAP6-1Q3LI64 71 aa6.19□□□□□ -1.42
NPAS3-201ENST00000346562 LCE1CQ5T751 118 aa6.14□□□□□ -1.43
NPAS3-201ENST00000346562 LCE1EQ5T753 118 aa6.14□□□□□ -1.43
NPAS3-201ENST00000346562 LCE1FQ5T754 118 aa6.14□□□□□ -1.43
NPAS3-201ENST00000346562 RNF213Q63HN8 5207 aa6.13□□□□□ -1.43
NPAS3-201ENST00000346562 KRTAP2-2Q9BYT5 123 aa6.1□□□□□ -1.43
NPAS3-201ENST00000346562 SYNE2Q8WXH0 6885 aaKnown RBP6.05□□□□□ -1.44
NPAS3-201ENST00000346562 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.05□□□□□ -1.44
NPAS3-201ENST00000346562 FAT4Q6V0I7 4981 aa6.05□□□□□ -1.44
NPAS3-201ENST00000346562 HMCN2Q8NDA2 5059 aa5.94□□□□□ -1.46
NPAS3-201ENST00000346562 KRTAP9-6A8MVA2 160 aa5.82□□□□□ -1.48
NPAS3-201ENST00000346562 FSIP2Q5CZC0 6907 aa5.76□□□□□ -1.49
NPAS3-201ENST00000346562 UBR4Q5T4S7 5183 aa5.75□□□□□ -1.49
NPAS3-201ENST00000346562 SYNE1Q8NF91 8797 aaKnown RBP5.73□□□□□ -1.49
NPAS3-201ENST00000346562 MUC2Q02817 5179 aa5.72□□□□□ -1.49
NPAS3-201ENST00000346562 KRTAP9-9Q9BYP9 154 aa5.65□□□□□ -1.51
NPAS3-201ENST00000346562 OBSCNQ5VST9 7968 aa5.52□□□□□ -1.53
NPAS3-201ENST00000346562 KRTAP5-9P26371 169 aa5.13□□□□□ -1.59
NPAS3-201ENST00000346562 KRTAP4-11Q9BYQ6 195 aa5.11□□□□□ -1.59
NPAS3-201ENST00000346562 NEBP20929 6669 aa5.1□□□□□ -1.59
NPAS3-201ENST00000346562 KRTAP20-2Q3LI61 65 aa5.06□□□□□ -1.6
NPAS3-201ENST00000346562 KRTAP4-6Q9BYQ5 205 aa5.04□□□□□ -1.6
NPAS3-201ENST00000346562 USH2AO75445 5202 aa4.97□□□□□ -1.61
NPAS3-201ENST00000346562 SSPOA2VEC9 5147 aa4.77□□□□□ -1.65
NPAS3-201ENST00000346562 KMT2DO14686 5537 aa4.77□□□□□ -1.65
NPAS3-201ENST00000346562 KRTAP5-4Q6L8H1 288 aa4.76□□□□□ -1.65
NPAS3-201ENST00000346562 KRTAP4-4Q9BYR3 166 aa4.75□□□□□ -1.65
NPAS3-201ENST00000346562 KRTAP4-12Q9BQ66 201 aa4.71□□□□□ -1.66
NPAS3-201ENST00000346562 KRTAP4-2Q9BYR5 136 aa4.71□□□□□ -1.66
NPAS3-201ENST00000346562 MACF1Q9UPN3 7388 aaKnown RBP4.7□□□□□ -1.66
NPAS3-201ENST00000346562 FCGBPQ9Y6R7 5405 aaPredicted RBP4.68□□□□□ -1.66
NPAS3-201ENST00000346562 DSTQ03001 7570 aaKnown RBP4.64□□□□□ -1.67
NPAS3-201ENST00000346562 MUC12Q9UKN1 5478 aa4.45□□□□□ -1.7
NPAS3-201ENST00000346562 KRTAP5-5Q701N2 237 aaPredicted RBP4.33□□□□□ -1.72
NPAS3-201ENST00000346562 MDN1Q9NU22 5596 aa4.3□□□□□ -1.72
NPAS3-201ENST00000346562 GPR98Q8WXG9 6306 aa4.27□□□□□ -1.73
NPAS3-201ENST00000346562 MUC19Q7Z5P9 8384 aa4.25□□□□□ -1.73
NPAS3-201ENST00000346562 KRTAP5-3Q6L8H2 238 aa4.13□□□□□ -1.75
NPAS3-201ENST00000346562 MUC5ACP98088 5654 aa3.78□□□□□ -1.8
NPAS3-201ENST00000346562 KRTAP5-8O75690 187 aa3.7□□□□□ -1.82
NPAS3-201ENST00000346562 AHNAK2Q8IVF2 5795 aa3.69□□□□□ -1.82
NPAS3-201ENST00000346562 PHGR1C9JFL3 82 aa3.66□□□□□ -1.82
NPAS3-201ENST00000346562 KRTAP5-10Q6L8G5 202 aa3.53□□□□□ -1.84
NPAS3-201ENST00000346562 KRTAP5-2Q701N4 177 aa3.4□□□□□ -1.87
NPAS3-201ENST00000346562 HMCN1Q96RW7 5635 aa3.39□□□□□ -1.87
NPAS3-201ENST00000346562 MUC5BQ9HC84 5762 aaPredicted RBP3.36□□□□□ -1.87
NPAS3-201ENST00000346562 KRTAP5-11Q6L8G4 156 aa3.25□□□□□ -1.89
NPAS3-201ENST00000346562 KRTAP5-1Q6L8H4 278 aa3.18□□□□□ -1.9
NPAS3-201ENST00000346562 AHNAKQ09666 5890 aaKnown RBP3.02□□□□□ -1.93
NPAS3-201ENST00000346562 KRTAP21-2Q3LI59 83 aa2.95□□□□□ -1.94
NPAS3-201ENST00000346562 KRTAP21-1Q3LI58 79 aa2.8□□□□□ -1.96
NPAS3-201ENST00000346562 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.71□□□□□ -1.98
NPAS3-201ENST00000346562 KRTAP5-7Q6L8G8 165 aa2.52□□□□□ -2.01
NPAS3-201ENST00000346562 MUC16Q8WXI7 14507 aa2.01□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 11.2 ms