RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 LOC100996750A0A140TA64 210 aa1.43□□□□□ -2.18
CSMD3-203ENST00000343508 KRTAP9-6A8MVA2 160 aa1.43□□□□□ -2.18
CSMD3-203ENST00000343508 MT1AP04731 61 aa1.43□□□□□ -2.18
CSMD3-203ENST00000343508 ABCA13Q86UQ4 5058 aa1.43□□□□□ -2.18
CSMD3-203ENST00000343508 FAT4Q6V0I7 4981 aa1.43□□□□□ -2.18
CSMD3-203ENST00000343508 LCE2DQ5TA82 110 aaPredicted RBP1.41□□□□□ -2.18
CSMD3-203ENST00000343508 PCLOQ9Y6V0 5065 aa1.41□□□□□ -2.18
CSMD3-203ENST00000343508 SPRR2DP22532 72 aa1.4□□□□□ -2.19
CSMD3-203ENST00000343508 HERC1Q15751 4861 aa1.39□□□□□ -2.19
CSMD3-203ENST00000343508 SYNE2Q8WXH0 6885 aaKnown RBP1.39□□□□□ -2.19
CSMD3-203ENST00000343508 KRTAP4-3Q9BYR4 195 aa1.39□□□□□ -2.19
CSMD3-203ENST00000343508 MT3P25713 68 aa1.38□□□□□ -2.19
CSMD3-203ENST00000343508 LCE2AQ5TA79 106 aaPredicted RBP1.37□□□□□ -2.19
CSMD3-203ENST00000343508 BIRC6Q9NR09 4857 aa1.36□□□□□ -2.19
CSMD3-203ENST00000343508 KRTAP4-9Q9BYQ8 210 aa1.32□□□□□ -2.2
CSMD3-203ENST00000343508 KMT2DO14686 5537 aa1.32□□□□□ -2.2
CSMD3-203ENST00000343508 LCE5AQ5TCM9 118 aa1.31□□□□□ -2.2
CSMD3-203ENST00000343508 KRTAP9-2Q9BYQ4 174 aa1.3□□□□□ -2.2
CSMD3-203ENST00000343508 UBR4Q5T4S7 5183 aa1.3□□□□□ -2.2
CSMD3-203ENST00000343508 KRTAP6-2Q3LI66 62 aa1.29□□□□□ -2.2
CSMD3-203ENST00000343508 KRTAP6-1Q3LI64 71 aa1.28□□□□□ -2.2
CSMD3-203ENST00000343508 KRTAP9-4Q9BYQ2 154 aa1.28□□□□□ -2.21
CSMD3-203ENST00000343508 KRTAP9-7A8MTY7 169 aa1.26□□□□□ -2.21
CSMD3-203ENST00000343508 SYNE1Q8NF91 8797 aaKnown RBP1.25□□□□□ -2.21
CSMD3-203ENST00000343508 RNF213Q63HN8 5207 aa1.25□□□□□ -2.21
CSMD3-203ENST00000343508 LCE1AQ5T7P2 110 aa1.24□□□□□ -2.21
CSMD3-203ENST00000343508 MT4P47944 62 aa1.21□□□□□ -2.22
CSMD3-203ENST00000343508 USH2AO75445 5202 aa1.2□□□□□ -2.22
CSMD3-203ENST00000343508 KRTAP2-2Q9BYT5 123 aa1.2□□□□□ -2.22
CSMD3-203ENST00000343508 FSIP2Q5CZC0 6907 aa1.2□□□□□ -2.22
CSMD3-203ENST00000343508 LCE1DQ5T752 114 aa1.2□□□□□ -2.22
CSMD3-203ENST00000343508 MACF1Q9UPN3 7388 aaKnown RBP1.19□□□□□ -2.22
CSMD3-203ENST00000343508 DSTQ03001 7570 aaKnown RBP1.18□□□□□ -2.22
CSMD3-203ENST00000343508 LCE1BQ5T7P3 118 aa1.18□□□□□ -2.22
CSMD3-203ENST00000343508 KRTAP6-3Q3LI67 103 aa1.16□□□□□ -2.22
CSMD3-203ENST00000343508 LCE4AQ5TA78 99 aa1.14□□□□□ -2.23
CSMD3-203ENST00000343508 KRTAP9-6A0A140TA67 174 aa1.12□□□□□ -2.23
CSMD3-203ENST00000343508 FCGBPQ9Y6R7 5405 aaPredicted RBP1.11□□□□□ -2.23
CSMD3-203ENST00000343508 KRTAP5-5Q701N2 237 aaPredicted RBP1.11□□□□□ -2.23
CSMD3-203ENST00000343508 KRTAP5-9P26371 169 aa1.11□□□□□ -2.23
CSMD3-203ENST00000343508 SSPOA2VEC9 5147 aa1.1□□□□□ -2.23
CSMD3-203ENST00000343508 OBSCNQ5VST9 7968 aa1.06□□□□□ -2.24
CSMD3-203ENST00000343508 KRTAP4-11Q9BYQ6 195 aa1.04□□□□□ -2.24
CSMD3-203ENST00000343508 KRTAP9-9Q9BYP9 154 aa1.02□□□□□ -2.25
CSMD3-203ENST00000343508 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.02□□□□□ -2.25
CSMD3-203ENST00000343508 MUC12Q9UKN1 5478 aa1□□□□□ -2.25
CSMD3-203ENST00000343508 KRTAP4-6Q9BYQ5 205 aa0.99□□□□□ -2.25
CSMD3-203ENST00000343508 KRTAP20-1Q3LI63 56 aa0.99□□□□□ -2.25
CSMD3-203ENST00000343508 KRTAP20-2Q3LI61 65 aa0.98□□□□□ -2.25
CSMD3-203ENST00000343508 LCE1EQ5T753 118 aa0.98□□□□□ -2.25
CSMD3-203ENST00000343508 KRTAP5-4Q6L8H1 288 aa0.94□□□□□ -2.26
CSMD3-203ENST00000343508 LCE1CQ5T751 118 aa0.93□□□□□ -2.26
CSMD3-203ENST00000343508 LCE1FQ5T754 118 aa0.93□□□□□ -2.26
CSMD3-203ENST00000343508 NEBP20929 6669 aa0.89□□□□□ -2.27
CSMD3-203ENST00000343508 KRTAP5-10Q6L8G5 202 aa0.89□□□□□ -2.27
CSMD3-203ENST00000343508 MDN1Q9NU22 5596 aa0.89□□□□□ -2.27
CSMD3-203ENST00000343508 GPR98Q8WXG9 6306 aa0.88□□□□□ -2.27
CSMD3-203ENST00000343508 KRTAP5-2Q701N4 177 aa0.85□□□□□ -2.27
CSMD3-203ENST00000343508 KRTAP4-4Q9BYR3 166 aa0.83□□□□□ -2.28
CSMD3-203ENST00000343508 AHNAKQ09666 5890 aaKnown RBP0.82□□□□□ -2.28
CSMD3-203ENST00000343508 AHNAK2Q8IVF2 5795 aa0.8□□□□□ -2.28
CSMD3-203ENST00000343508 KRTAP5-3Q6L8H2 238 aa0.8□□□□□ -2.28
CSMD3-203ENST00000343508 KRTAP5-1Q6L8H4 278 aa0.78□□□□□ -2.28
CSMD3-203ENST00000343508 MUC19Q7Z5P9 8384 aa0.76□□□□□ -2.29
CSMD3-203ENST00000343508 KRTAP4-12Q9BQ66 201 aa0.76□□□□□ -2.29
CSMD3-203ENST00000343508 KRTAP4-2Q9BYR5 136 aa0.76□□□□□ -2.29
CSMD3-203ENST00000343508 KRTAP21-1Q3LI58 79 aa0.76□□□□□ -2.29
CSMD3-203ENST00000343508 HMCN1Q96RW7 5635 aa0.75□□□□□ -2.29
CSMD3-203ENST00000343508 KRTAP21-2Q3LI59 83 aa0.74□□□□□ -2.29
CSMD3-203ENST00000343508 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.74□□□□□ -2.29
CSMD3-203ENST00000343508 KRTAP5-11Q6L8G4 156 aa0.72□□□□□ -2.29
CSMD3-203ENST00000343508 MUC5ACP98088 5654 aa0.72□□□□□ -2.29
CSMD3-203ENST00000343508 MUC5BQ9HC84 5762 aaPredicted RBP0.71□□□□□ -2.3
CSMD3-203ENST00000343508 KRTAP5-8O75690 187 aa0.71□□□□□ -2.3
CSMD3-203ENST00000343508 KRTAP5-7Q6L8G8 165 aa0.66□□□□□ -2.3
CSMD3-203ENST00000343508 PHGR1C9JFL3 82 aa0.62□□□□□ -2.31
CSMD3-203ENST00000343508 MUC16Q8WXI7 14507 aa0.56□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 10.2 ms