RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 FCGBPQ9Y6R7 5405 aaPredicted RBP2.35□□□□□ -2.03
VCAN-202ENST00000342785 USH2AO75445 5202 aa2.33□□□□□ -2.04
VCAN-202ENST00000342785 SPRR2EP22531 72 aa2.32□□□□□ -2.04
VCAN-202ENST00000342785 SPRR2BP35325 72 aa2.32□□□□□ -2.04
VCAN-202ENST00000342785 SPRR2AP35326 72 aa2.32□□□□□ -2.04
VCAN-202ENST00000342785 LOC100996750A0A140TA64 210 aa2.31□□□□□ -2.04
VCAN-202ENST00000342785 KRTAP19-6Q3LI70 58 aa2.31□□□□□ -2.04
VCAN-202ENST00000342785 KRTAP4-6Q9BYQ5 205 aa2.31□□□□□ -2.04
VCAN-202ENST00000342785 DSTQ03001 7570 aaKnown RBP2.3□□□□□ -2.04
VCAN-202ENST00000342785 MT1MQ8N339 61 aa2.29□□□□□ -2.04
VCAN-202ENST00000342785 KRTAP4-3Q9BYR4 195 aa2.28□□□□□ -2.04
VCAN-202ENST00000342785 LCE3DQ9BYE3 92 aa2.27□□□□□ -2.05
VCAN-202ENST00000342785 LCE3EQ5T5B0 92 aa2.24□□□□□ -2.05
VCAN-202ENST00000342785 KRTAP9-6A8MVA2 160 aa2.24□□□□□ -2.05
VCAN-202ENST00000342785 SPRR2DP22532 72 aa2.23□□□□□ -2.05
VCAN-202ENST00000342785 SYNE2Q8WXH0 6885 aaKnown RBP2.21□□□□□ -2.06
VCAN-202ENST00000342785 KRTAP2-3P0C7H8 128 aa2.21□□□□□ -2.06
VCAN-202ENST00000342785 KRTAP2-4Q9BYR9 128 aa2.21□□□□□ -2.06
VCAN-202ENST00000342785 KRTAP2-1Q9BYU5 128 aa2.21□□□□□ -2.06
VCAN-202ENST00000342785 KMT2DO14686 5537 aa2.19□□□□□ -2.06
VCAN-202ENST00000342785 SSPOA2VEC9 5147 aa2.17□□□□□ -2.06
VCAN-202ENST00000342785 MUC12Q9UKN1 5478 aa2.14□□□□□ -2.07
VCAN-202ENST00000342785 LCE2DQ5TA82 110 aaPredicted RBP2.13□□□□□ -2.07
VCAN-202ENST00000342785 KRTAP9-2Q9BYQ4 174 aa2.11□□□□□ -2.07
VCAN-202ENST00000342785 MT1AP04731 61 aa2.11□□□□□ -2.07
VCAN-202ENST00000342785 MT3P25713 68 aa2.11□□□□□ -2.07
VCAN-202ENST00000342785 KRTAP4-9Q9BYQ8 210 aa2.1□□□□□ -2.07
VCAN-202ENST00000342785 MACF1Q9UPN3 7388 aaKnown RBP2.08□□□□□ -2.08
VCAN-202ENST00000342785 LCE5AQ5TCM9 118 aa2.07□□□□□ -2.08
VCAN-202ENST00000342785 PRM1P04553 51 aa2.06□□□□□ -2.08
VCAN-202ENST00000342785 KRTAP6-1Q3LI64 71 aa2.03□□□□□ -2.08
VCAN-202ENST00000342785 MDN1Q9NU22 5596 aa2.02□□□□□ -2.09
VCAN-202ENST00000342785 MT4P47944 62 aa2□□□□□ -2.09
VCAN-202ENST00000342785 LCE1AQ5T7P2 110 aa2□□□□□ -2.09
VCAN-202ENST00000342785 KRTAP6-2Q3LI66 62 aa1.93□□□□□ -2.1
VCAN-202ENST00000342785 LCE1DQ5T752 114 aa1.92□□□□□ -2.1
VCAN-202ENST00000342785 MUC19Q7Z5P9 8384 aa1.92□□□□□ -2.1
VCAN-202ENST00000342785 KRTAP9-4Q9BYQ2 154 aa1.92□□□□□ -2.1
VCAN-202ENST00000342785 KRTAP6-3Q3LI67 103 aa1.91□□□□□ -2.1
VCAN-202ENST00000342785 LCE1BQ5T7P3 118 aa1.91□□□□□ -2.1
VCAN-202ENST00000342785 KRTAP9-6A0A140TA67 174 aa1.91□□□□□ -2.1
VCAN-202ENST00000342785 KRTAP9-7A8MTY7 169 aa1.89□□□□□ -2.11
VCAN-202ENST00000342785 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.87□□□□□ -2.11
VCAN-202ENST00000342785 KRTAP5-9P26371 169 aa1.81□□□□□ -2.12
VCAN-202ENST00000342785 NEBP20929 6669 aa1.81□□□□□ -2.12
VCAN-202ENST00000342785 LCE4AQ5TA78 99 aa1.78□□□□□ -2.13
VCAN-202ENST00000342785 KRTAP20-1Q3LI63 56 aa1.76□□□□□ -2.13
VCAN-202ENST00000342785 GPR98Q8WXG9 6306 aa1.75□□□□□ -2.13
VCAN-202ENST00000342785 KRTAP5-3Q6L8H2 238 aa1.75□□□□□ -2.13
VCAN-202ENST00000342785 KRTAP2-2Q9BYT5 123 aa1.74□□□□□ -2.13
VCAN-202ENST00000342785 LCE1CQ5T751 118 aa1.73□□□□□ -2.13
VCAN-202ENST00000342785 LCE1EQ5T753 118 aa1.73□□□□□ -2.13
VCAN-202ENST00000342785 LCE1FQ5T754 118 aa1.73□□□□□ -2.13
VCAN-202ENST00000342785 KRTAP4-2Q9BYR5 136 aa1.69□□□□□ -2.14
VCAN-202ENST00000342785 KRTAP4-12Q9BQ66 201 aa1.66□□□□□ -2.14
VCAN-202ENST00000342785 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
VCAN-202ENST00000342785 KRTAP5-5Q701N2 237 aaPredicted RBP1.65□□□□□ -2.15
VCAN-202ENST00000342785 HMCN1Q96RW7 5635 aa1.64□□□□□ -2.15
VCAN-202ENST00000342785 KRTAP20-2Q3LI61 65 aa1.63□□□□□ -2.15
VCAN-202ENST00000342785 KRTAP9-9Q9BYP9 154 aa1.63□□□□□ -2.15
VCAN-202ENST00000342785 MUC5ACP98088 5654 aa1.62□□□□□ -2.15
VCAN-202ENST00000342785 AHNAK2Q8IVF2 5795 aa1.55□□□□□ -2.16
VCAN-202ENST00000342785 KRTAP4-11Q9BYQ6 195 aa1.55□□□□□ -2.16
VCAN-202ENST00000342785 KRTAP5-4Q6L8H1 288 aa1.48□□□□□ -2.17
VCAN-202ENST00000342785 KRTAP5-2Q701N4 177 aa1.46□□□□□ -2.18
VCAN-202ENST00000342785 KRTAP4-4Q9BYR3 166 aa1.41□□□□□ -2.18
VCAN-202ENST00000342785 AHNAKQ09666 5890 aaKnown RBP1.38□□□□□ -2.19
VCAN-202ENST00000342785 KRTAP5-10Q6L8G5 202 aa1.3□□□□□ -2.2
VCAN-202ENST00000342785 MUC5BQ9HC84 5762 aaPredicted RBP1.29□□□□□ -2.2
VCAN-202ENST00000342785 KRTAP5-8O75690 187 aa1.22□□□□□ -2.21
VCAN-202ENST00000342785 KRTAP5-1Q6L8H4 278 aa1.17□□□□□ -2.22
VCAN-202ENST00000342785 KRTAP21-2Q3LI59 83 aa1.14□□□□□ -2.23
VCAN-202ENST00000342785 KRTAP5-11Q6L8G4 156 aa1.12□□□□□ -2.23
VCAN-202ENST00000342785 PHGR1C9JFL3 82 aa1.06□□□□□ -2.24
VCAN-202ENST00000342785 KRTAP21-1Q3LI58 79 aa1□□□□□ -2.25
VCAN-202ENST00000342785 KRTAP5-7Q6L8G8 165 aa0.98□□□□□ -2.25
VCAN-202ENST00000342785 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 73.2 ms